Sequence
atgc intronic sequence ATGC exonic sequence...tcagtgctagtgcattacactaaatataactatatgataaccttacatatatgactcttgatgctatttcgtaactcattctattttctcaacaatgaagGGTATACATATCAATAATTCTGAGCGGGGATAGAACTGGAAGGTTACTAAAATACGTTCCAAGTACCCAAAGTGTACATGTTTTGGTCAAAGGTTTAGCA
Basic information
species | Glycine max |
transcript | GLYMA16G12090.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9258820|gb|BE346967.1|BE346967EST: AAAACAGGTGAAGTATATTTCACAGATAGCAGCATCATGTTCCAAAGAAG GGTATACATATCAATAATTCTGAGCGGGGATAGAACTGGAAGGTTACTAAA
genomic: AAAACAGGTGAAGTATATTTCACAGATAGCAGCATCATGTTCCAAAGAAGgtatgctcta ... aacaatgaagGGTATACATATCAATAATTCTGAGCGGGGATAGAACTGGAAGGTTACTAAA
EST:
gi|51343157|gb|CO983890.1|CO983890EST: AAAACAGGTGAAGTATATTTCACAGATAGCAGCATCATGTTCCAAAGAAG GGTATACATATCAATAATTCTGAGCGGGGATAGAACTGGAAGGTTACTAAA
genomic: AAAACAGGTGAAGTATATTTCACAGATAGCAGCATCATGTTCCAAAGAAGgtatgctcta ... aacaatgaagGGTATACATATCAATAATTCTGAGCGGGGATAGAACTGGAAGGTTACTAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catatatgactcttgatgctatttcgtaactcattctattttctcaacaatgaagGGTATACATATCAATAATTCTGAGCGGGGATAGAACTGGAAGGTTACTAAAATACGTTCCAAGTACCCAAAGTGTACATGTTTTGGTCAAAGGTTTAGCA
tcgtaac putative branch site (score: 2)
ttttctca putative PPT
attctatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcagtgctagtgcattacactaaatataactatatgataaccttacatatatgactcttgatgctatttcgtaactcattctattttctcaacaatgaagGGTATACATATCAATAATTCTGAGCGGGGATAGAACTGGAAGGTTACTAAAATACGTTCCAAGTACCCAAAGTGTACATGTTTTGGTCAAAGGTTTAGCA
tcagtgc
- - - - - -gcattac
- - - - - - - - - - -aaatataa
- - - - - - - - - - - - - - - - - - - - ccttaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct