Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgaagtttttgcttgtcaatgtgcattaacaataatatggtgaaactgagttttatgcccccgtttttgcttactatcgatgctctgtctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG

Basic information

species Glycine max
transcript GLYMA16G10750.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G10750.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0260g00060.t01 (Vitis vinifera), 3'ss of exon 2
actgaagtttttgcttgtcaatgtgcattaacaataatatggtgaaactgagttttatgcccccgttt--ttgcttactatcgatgctctgtctct----ttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG
     |  || |   | || || |   |    |   ||||    | |   |  ||||||||     ||  || ||||   | |      |   |      || ||| |||| |||| ||| |||||  ||||||| ||||||||||||| ||| |||||||||||| ||
----tatattctatctatctatctatctatctatctatatatgtatat--atatttatgccattagttgcttacttatgtttgggatcttcctttcattgttacagTATAAGCCAGAATCTTGTGACATTCAGGCTCACAAAGGTGACAAAGTGAAAGTACACTATCGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193542130|gb|FK496228.1|FK496228
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGA
EST: gi|13312663|gb|BG406314.1|BG406314
EST:     CGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTT-AGGCACACAAAGGTGACAGAGTCAAA
genomic: CGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|298193329|gb|HO033763.1|HO033763
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCACGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|27423853|gb|CA935373.1|CA935373
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|298175734|gb|HO018331.1|HO018331
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|24135582|gb|BU926092.1|BU926092
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTTAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|27427266|gb|CA938786.1|CA938786
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|192324946|gb|FK016117.1|FK016117
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|192297771|gb|FG989977.1|FG989977
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|26267833|gb|CA818896.1|CA818896
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|298198249|gb|HO039788.1|HO039788
EST:     TTTCTGCGAAGAAAACTGGTGATGTAACGGAGCTGCAAACTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|298170036|gb|HO018660.1|HO018660
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAGACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|192315333|gb|FK009625.1|FK009625
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|193634963|gb|FK585298.1|FK585298
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|14011654|gb|BG726576.1|BG726576
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|151407606|gb|EV277421.1|EV277421
EST:     TTTCTGCGAAGAAAACTGGTGATGCGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|298187400|gb|HO034549.1|HO034549
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|192327623|gb|FK020656.1|FK020656
EST:     GACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: GACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|209726138|gb|BW675313.1|BW675313
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|208210805|gb|GE009122.1|GE009122
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|4283975|gb|AI440723.1|AI440723
EST:     TGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|6747607|gb|AW318120.1|AW318120
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|193654297|gb|FK597411.1|FK597411
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTACGAGGCACAC
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTT-C-AGGCACAC
EST: gi|6847379|gb|AW349669.1|AW349669
EST:     CTGCGAAGAAAACNNGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: CTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|22526013|gb|BU084824.1|BU084824
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|208235723|gb|GE033745.1|GE033745
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|31461364|gb|CD403392.1|CD403392
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|7146975|gb|AW508897.1|AW508897
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|12774035|gb|BG238962.1|BG238962
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|207776702|gb|GD748764.1|GD748764
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|193523670|gb|FK480967.1|FK480967
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGACGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|193660662|gb|FK606386.1|FK606386
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|207767557|gb|GD739297.1|GD739297
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|38192531|gb|CF921737.1|CF921737
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|298162996|gb|HO011729.1|HO011729
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|192304037|gb|FG993881.1|FG993881
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|209700345|gb|BW664382.1|BW664382
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|209726139|gb|BW675314.1|BW675314
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|10845833|gb|BF068875.1|BF068875
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|27423836|gb|CA935356.1|CA935356
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|15203525|gb|BI426293.1|BI426293
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|193320679|gb|FK285640.1|FK285640
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|208279290|gb|GE080805.1|GE080805
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGA
EST: gi|7589192|gb|AW704971.1|AW704971
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|11413630|gb|BF425641.1|BF425641
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|14990944|gb|BI316617.1|BI316617
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|17402092|gb|BM178874.1|BM178874
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|9899664|gb|BE608632.1|BE608632
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|31475040|gb|CD417068.1|CD417068
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|151402182|gb|EV271995.1|EV271995
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|298185920|gb|HO031081.1|HO031081
EST:     TTTCTGCGAAGAAAACTGGTGATGTGATGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|192325979|gb|FK016656.1|FK016656
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|213601554|gb|DB972346.1|DB972346
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|298166273|gb|HO009244.1|HO009244
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|9902932|gb|BE611900.1|BE611900
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|20498677|gb|BQ273607.1|BQ273607
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|38193858|gb|CF923064.1|CF923064
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|193635905|gb|FK582962.1|FK582962
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTT
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTT
EST: gi|193348861|gb|FK316985.1|FK316985
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAGG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGA
EST: gi|5509520|gb|AI856078.1|AI856078
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|254347228|gb|GR856898.1|GR856898
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|9901330|gb|BE610298.1|BE610298
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTC-GGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|14195946|gb|BE657760.2|BE657760
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|13481192|gb|BG510535.1|BG510535
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|208185008|gb|GD984980.1|GD984980
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|193465812|gb|FK433389.1|FK433389
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTNAG-CACAC
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACAC
EST: gi|208246223|gb|GE048385.1|GE048385
EST:     CAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: CAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|207701587|gb|GD682916.1|GD682916
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACA
EST: gi|192295117|gb|FG986836.1|FG986836
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|192328912|gb|FK019667.1|FK019667
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|42722852|gb|CK768751.1|CK768751
EST:     TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: TTTCTGCGAAGAAAACTGGTGATGTGACGGAGCTGCAAATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
EST: gi|13181466|gb|BG352806.1|BG352806
EST:     TGGCGAAGAAAACCTGGTGATGTGANCGGAGCTGCANAATTGGCGTGAAG                         CATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA
genomic: T-GCGAAGAAAA-CTGGTGATGTGA-CGGAGCTGCA-AATTGGCGTGAAGgtaaacctct ... ctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgagttttatgcccccgtttttgcttactatcgatgctctgtctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG
                        tgcttac  putative branch site (score: 2)
                                     tgctctgtctcttt  putative PPT
     agttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actgaagtttttgcttgtcaatgtgcattaacaataatatggtgaaactgagttttatgcccccgtttttgcttactatcgatgctctgtctctttgcagCATAAACCAGTATCATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG

- - - - - -tgcttgt
- - - - - - - - - - - -tgcatta
- - - - - - - - - - - - - - - - - - -tatggtg
- - - - - - - - - - - - - - - - - - - - - - - -ctgagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgctc