1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attagattctgttttgacaacgggatggaagaggagcaaagttgctgggcatgattcccatcttatagcactgattctttttctctctttttttttccagGGTATTTGAAAAGTCACTGCAGTATGTGAAACGTTTCAGTCGCTATAAAAATCCTGATGCTGTCAGACAAGTTCGAGA
species | Glycine max |
transcript | GLYMA16G09890.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCAACAGACATCTGATGATCCCATGAATCAAATTTCTCA GGTATTTGAAAAGTCACTGCAGTATGTGAAACGCTTCAGTCGCTATAAAAAEST: gi|7145703|gb|AW507625.1|AW507625
genomic: TTCAACAGACATCTGATGATCCCATGAATCAAATTTCTCAgtgagttaaa ... ttttttccagGGTATTTGAAAAGTCACTGCAGTATGTGAAACGTTTCAGTCGCTATAAAAA
EST: TATGAGCAGCTTCAACAGACATCTGATGATCCCATGAATCAAATTTCTCA GGTATTTGAAAAGTCACTGCAGTATGTGAAACGTTTCAGTCGCTATAAAAAEST: gi|10254879|gb|BE822645.1|BE822645
genomic: TATGAGCAGCTTCAACAGACATCTGATGATCCCATGAATCAAATTTCTCAgtgagttaaa ... ttttttccagGGTATTTGAAAAGTCACTGCAGTATGTGAAACGTTTCAGTCGCTATAAAAA
EST: TATGAGCAGCTTCAACAGACATCTGATGATCCCATGAATCAAATTTCTCA GGTATTTGAAAAGTCACTGCAGTATGTGAAACGTTTCAGTCGCTATAAAAAEST: gi|192303824|gb|FG998176.1|FG998176
genomic: TATGAGCAGCTTCAACAGACATCTGATGATCCCATGAATCAAATTTCTCAgtgagttaaa ... ttttttccagGGTATTTGAAAAGTCACTGCAGTATGTGAAACGTTTCAGTCGCTATAAAAA
EST: TATGAGCAGCTTCAACAGACATCTGATGATCCCATGAATCAAATTTCTCA GGTATTTGAAAAGTCACTGCAGTATGTGAAACGTTTCAGTCGCTATAAAAA
genomic: TATGAGCAGCTTCAACAGACATCTGATGATCCCATGAATCAAATTTCTCAgtgagttaaa ... ttttttccagGGTATTTGAAAAGTCACTGCAGTATGTGAAACGTTTCAGTCGCTATAAAAA
tgggcatgattcccatcttatagcactgattctttttctctctttttttttccagGGTATTTGAAAAGTCACTGCAGTATGTGAAACGTTTCAGTCGCTATAAAAATCCTGATGCTGTCAGACAAGTTCGAGA
cactgat putative branch site (score: 3)
cactgattctttttct CT-rich tract
tcttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attagattctgttttgacaacgggatggaagaggagcaaagttgctgggcatgattcccatcttatagcactgattctttttctctctttttttttccagGGTATTTGAAAAGTCACTGCAGTATGTGAAACGTTTCAGTCGCTATAAAAATCCTGATGCTGTCAGACAAGTTCGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - gattctg
- - - - - - - tgacaac
- - - - - - - - - - -gggatgg
- - - - - - - - - - - - - - - - - - - - gttgctg
- - - - - - - - - - - - - - - - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cccatct