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...tgactgttctaatagactttcagctgaaaatgattctgattgtagcatttgttgaccctgagtttaatttataaatcatgtggatattgatgtgtttcagGTCCTTTTAATTTTGAGGCAGCAAAGACAAGGGGGGGTCTTCCCACACTGCACCTCAATCCATACAGCTGGTCAAAG
species | Glycine max |
transcript | GLYMA16G09320.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAATGGGGGACCTGGCTGCTCTAGCTTCGATGGATTCATATATGAGCATG GTCCTTTTAATTTTGAGGCAGCAAAGACAANNNNNNNTCTTCCCACACTGCEST: gi|193658111|gb|FK601578.1|FK601578
genomic: TAATGGGGGACCTGGCTGCTCTAGCTTCGATGGATTCATATATGAGCATGgtaattaatt ... tgtgtttcagGTCCTTTTAATTTTGAGGCAGCAAAGACAAGGGGGGGTCTTCCCACACTGC
EST: TAATGGGGGACCTGGCTGCTCTAGCTTCGATGGATTCATATATGAGCATG GTCCTTTTAATTTTGAAGGACAAGCAAAGACAAGGGGGG
genomic: TAATGGGGGACCTGGCTGCTCTAGCTTCGATGGATTCATATATGAGCATGgtaattaatt ... tgtgtttcagGTCCTTTTAATTTTGA-GG-CA-GCAAAGACAAGGGGGG
catttgttgaccctgagtttaatttataaatcatgtggatattgatgtgtttcagGTCCTTTTAATTTTGAGGCAGCAAAGACAAGGGGGGGTCTTCCCACACTGCACCTCAATCCATACAGCTGGTCAAAG
tattgat putative branch site (score: 3)
tgagtttaatttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgactgttctaatagactttcagctgaaaatgattctgattgtagcatttgttgaccctgagtttaatttataaatcatgtggatattgatgtgtttcagGTCCTTTTAATTTTGAGGCAGCAAAGACAAGGGGGGGTCTTCCCACACTGCACCTCAATCCATACAGCTGGTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - cagctga
- - - - - - - - - - - - - - - -gattctg
- - - - - - - - - - - - - - - - - - - - - - gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - -ttgaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtg