1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcccgttgcatggtttcaatttgttgataaaaaatatgttcccatgcaacaagatgattgtctgttgctattgctaatagctgttgtatattcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCTACTGGCAGTCAGTCCTTAAGAGCACTTGCATTAATTGGAGCTGGTTTGT
species | Glycine max |
transcript | GLYMA16G06700.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCTEST: gi|213597044|gb|DB966353.1|DB966353
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT
EST: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCTEST: gi|17023748|gb|BM094782.1|BM094782
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT
EST: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCTEST: gi|192306424|gb|FG997164.1|FG997164
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT
EST: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCTEST: gi|192324650|gb|FK018746.1|FK018746
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT
EST: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCTEST: gi|254314651|gb|GR829644.1|GR829644
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT
EST: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCTEST: gi|209723017|gb|BW668861.1|BW668861
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT
EST: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCTEST: gi|151408312|gb|EV278120.1|EV278120
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT
EST: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCTEST: gi|151401029|gb|EV270843.1|EV270843
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT
EST: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACT AACTCTCCCTTGTTGTCACCCATCGTAGCNNNNNNNGATGATGCTGGCTCT
genomic: GAGGTGTTATTCAGCAGATATTGAGGAGGAAACTCCACCCTCGGTTTACTgtaagccact ... ttcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCT
gcaacaagatgattgtctgttgctattgctaatagctgttgtatattcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCTACTGGCAGTCAGTCCTTAAGAGCACTTGCATTAATTGGAGCTGGTTTGT
tgctaat putative branch site (score: 2)
ttgtatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcccgttgcatggtttcaatttgttgataaaaaatatgttcccatgcaacaagatgattgtctgttgctattgctaatagctgttgtatattcactgcagAACTCTCCCTTGTTGTCACCCATCGTAGCAAAAAAAGATGATGCTGGCTCTACTGGCAGTCAGTCCTTAAGAGCACTTGCATTAATTGGAGCTGGTTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT