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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgttcatttaattttaaggcctaagtgcacccaccaaattttcattttaggaatgcgctttttaggtgatgagatgaatttgaaagggtaccttctagctggatgttgctcctgtgtgattaactgatatgtgagaaattctctttttgttttttgttttcttgaatgaagGATTTTTGATATATGGTGCTTGCATATTCCAGTCGCGGATCGAACATCATTTACAG

Basic information

species Glycine max
transcript GLYMA16G05570.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 2
gtttgtgttcatttaattttaag-gcc------taagtgcacccaccaaattttcattt-taggaatgcgctttttaggtgatgagatgaatttgaaagggtaccttctagctggatgttgctcctgtgtgattaactgatatgtgagaaattctctttttgttttttgttttcttgaatgaagGATTTTTGATATATGGTGCTTGCATATTCCAGTCGCGGATCGAACATCATTTACAG
||  |  |||| | ||  ||||  |||      ||  |  ||||    |   |    || ||    |  |  ||| |       ||||||   ||| |  | |   | |  |      | |  | ||| || |      |||  |   |||||  ||  ||  |  ||||||||||||||| ||| |||||||||||||||||||||||||||| || | |||||||||| | |||||||
gtaagcattcactcaaacttaattgccccttattagttaaacccgtggagaatatgcttgtacttgtctgtctttgaaaaagctagatga---tgagatagaattgttt--cctatcataggccatgtttggt------ataattattaaattgcctaatttatgattgttttcttgaatggagGCTTTTTGATATATGGTGCTTGCATATTCCTGTTGAGGATCGAACAACGTTTACAG

upper sequence: GLYMA16G05570.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0068g01440.t01 (Vitis vinifera), 3'ss of exon 2
gtttgtgttcatttaattttaaggcctaagtgcacccaccaaattttcattttaggaatgcgctttttaggtgatgagatgaatttgaaagggtaccttctagctggatgttgctcctgtgtgattaactgatatgtgagaaattctctttttgttttttgttttcttgaatgaagGATTTTTGATATATGGTGCTTGCATATTCCAGTCGCGGATCGAACATCATTTACAG
||  |  |||| | ||  | |||    || || |   |  |   ||   | ||     || |  |   | |  ||  |||||  |   |    ||   |||      |||    |    | ||   |  | ||   |   || ||  |    |   | |||||||||||||||||||||||| || ||||||||||||||||| || ||   |||||||||| |||||||||
gtaagcattcaatcaaactaaagttacaaatgga--gaatatgcttctgtctt-----tgtgtctccaaagaaatttgatga--tgatagaattatgatctgatgccatgccaattacctttgtccatataatcatt---aagttgcccagctcactattgttttcttgaatgaagGATTTTCGACATATGGTGCTTGCATATCCCTGTTATGGATCGAACACCATTTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattaactgatatgtgagaaattctctttttgttttttgttttcttgaatgaagGATTTTTGATATATGGTGCTTGCATATTCCAGTCGCGGATCGAACATCATTTACAG
                      ttctctttttgttttt  CT-rich tract
                           tttttgttttttgttt  TA-rich tract