1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttttgcttttatgactaaaattaattatttgttacctaattttttcttctgttctttttttaaaaaaaattgtagcttctttatctttgagaaaatgcagGTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTTGAAGCTTGTAAGCTTATCAGAAAGGAT
species | Glycine max |
transcript | GLYMA16G01230.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGT GTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGTEST: gi|209725663|gb|BW663152.1|BW663152
genomic: CCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTgtgagtgttt ... gaaaatgcagGTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGT
EST: CCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGT GTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGTEST: gi|4313794|gb|AI460913.1|AI460913
genomic: CCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTgtgagtgttt ... gaaaatgcagGTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGT
EST: CCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGT GTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGTEST: gi|298165726|gb|HO008697.1|HO008697
genomic: CCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTgtgagtgttt ... gaaaatgcagGTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGT
EST: CCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGT GTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGTEST: gi|5058332|gb|AI736808.1|AI736808
genomic: CCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTgtgagtgttt ... gaaaatgcagGTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGT
EST: CCAAGTGGAAATCTGCCTTCTGGTTTTGATCCAAGTACTTGCCGCAGTGT GTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGTEST: gi|5342734|gb|AI795018.1|AI795018
genomic: CCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTgtgagtgttt ... gaaaatgcagGTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGT
EST: CCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGT GTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGTEST: gi|4282741|gb|AI440569.1|AI440569
genomic: CCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTgtgagtgttt ... gaaaatgcagGTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGT
EST: CCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGT GTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGT
genomic: CCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTgtgagtgttt ... gaaaatgcagGTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGT
cttctgttctttttttaaaaaaaattgtagcttctttatctttgagaaaatgcagGTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTTGAAGCTTGTAAGCTTATCAGAAAGGAT
tttttttaaaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgcttttatgactaaaattaattatttgttacctaattttttcttctgttctttttttaaaaaaaattgtagcttctttatctttgagaaaatgcagGTATGTCGGGAACATCCATACGCAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTTGAAGCTTGTAAGCTTATCAGAAAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- -tgctttt
- - - - - - - - aaaattaa
- - - - - - - - - - - - - - -tgttacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttctt