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gttcgtcctaacaactctttaactgttaataacggttacttcttcgtagtgtggaagcgataactgtatcaatttttatttattttattgtgaaattgaaaacaagaaaaggaaaatttggaaggaatgttaataatgtgatgtttatgctgtgtgttgatggaaattttattagGAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTGACAGTCTTTGAGATTAGAAAATCGGAG
species | Glycine max |
transcript | GLYMA15G16320.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGAGCGCGGCATTGCCAAGCCAGAAACCATG GAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTGEST: gi|31307340|gb|CD392543.1|CD392543
genomic: TCGAGCGCGGCATTGCCAAGCCAGAAACCATGgttcgtccta ... attttattagGAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTG
EST: ACGTCGCTCCGGTTTTCTTCGAGCGCGGCATTGCCAAGCCAGAAACCATG GAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTAEST: gi|14991401|gb|BI317074.1|BI317074
genomic: ACGTCGCTCCGGTTTTCTTCGAGCGCGGCATTGCCAAGCCAGAAACCATGgttcgtccta ... attttattagGAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTG
EST: CAGAAACCATG GAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTAEST: gi|20207814|gb|BQ133903.1|BQ133903
genomic: CAGAAACCATGgttcgtccta ... attttattagGAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTG
EST: ACGTCGCTCCGGTTTTCTTCGAGCGCGGCATTGCCAAGCCAGAAACCATG GAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTG
genomic: ACGTCGCTCCGGTTTTCTTCGAGCGCGGCATTGCCAAGCCAGAAACCATGgttcgtccta ... attttattagGAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTG
gaaggaatgttaataatgtgatgtttatgctgtgtgttgatggaaattttattagGAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTGACAGTCTTTGAGATTAGAAAATCGGAG
ttttatt CT-rich tract
atggaaattttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtcctaacaactctttaactgttaataacggttacttcttcgtagtgtggaagcgataactgtatcaatttttatttattttattgtgaaattgaaaacaagaaaaggaaaatttggaaggaatgttaataatgtgatgtttatgctgtgtgttgatggaaattttattagGAGATTTCCAGCTTGAGTGTGGAGCCATGTGAAGGAGAAACTCTTGTGGTGACAGTCTTTGAGATTAGAAAATCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA