1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttagttagggaatctttcttagattgcttgctgtagcatatattatatgatcactgtggctgattttgaatttcttaatggacttgtagCAAATGTTTTTCACCGTGATCTAAAGCCAAAAAACATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGACTTTGGTCTTGCCAGAGTGGCTTTCAA
species | Glycine max |
transcript | GLYMA15G10940.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAGTTTTTCTTGTATCAGCTTCTACGAGGCTTGAAGTATATACACACAG CAAATGTTTTTCACCGTGATCTAAAGCCAAAAAACATTTTAGCAAATGCTGEST: gi|209718195|gb|BW657827.1|BW657827
genomic: CCAGTTTTTCTTGTATCAGCTTCTACGAGGCTTGAAGTATATACACACAGgttagttagg ... ggacttgtagCAAATGTTTTTCACCGTGATCTAAAGCCAAAAAACATTTTAGCAAATGCTG
EST: CCAGTTTTTCTTGTATCAGCTTCTACGAGGCTTGAAGTATATACACACAG CAAATGTTTTTCACCGTGATCTAAAGCCAAAAAACATTTTAGCAAATGCTGEST: gi|193585418|gb|FK539097.1|FK539097
genomic: CCAGTTTTTCTTGTATCAGCTTCTACGAGGCTTGAAGTATATACACACAGgttagttagg ... ggacttgtagCAAATGTTTTTCACCGTGATCTAAAGCCAAAAAACATTTTAGCAAATGCTG
EST: CCAGTTTTTCTTGTATCAGCTTCTACGAGGCTTGAAGTATATACACACAG CAAATGTTTTTCACCGTGATCTAAAGCCAAAAAACATTTTAGCAAATGCTG
genomic: CCAGTTTTTCTTGTATCAGCTTCTACGAGGCTTGAAGTATATACACACAGgttagttagg ... ggacttgtagCAAATGTTTTTCACCGTGATCTAAAGCCAAAAAACATTTTAGCAAATGCTG
agcatatattatatgatcactgtggctgattttgaatttcttaatggacttgtagCAAATGTTTTTCACCGTGATCTAAAGCCAAAAAACATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGACTTTGGTCTTGCCAGAGTGGCTTTCAA
tcttaat putative branch site (score: 3)
attttgaatttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttagggaatctttcttagattgcttgctgtagcatatattatatgatcactgtggctgattttgaatttcttaatggacttgtagCAAATGTTTTTCACCGTGATCTAAAGCCAAAAAACATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGACTTTGGTCTTGCCAGAGTGGCTTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA