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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttgatttgtctttcagagtgttcttcatctttttggggggttgcattcatgcttagctaaattggttttcagGATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCGTTTAAACTCCTTCAGATAGACGAGGAATTCAACCTTTTTGATG

Basic information

species Glycine max
transcript GLYMA15G07970.4
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07970.4 (Glycine max), 3'ss of exon 2
lower sequence: AT5G01230.1 (Arabidopsis thaliana), 3'ss of exon 2
----gtatggtt--gatttgtctttcagagtgttcttcat--------ctttttggggggttgcattcatg----cttagcta----------aattggttttcagGATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCGTTTAAACTCCTTCAGATAGACGAGGAATTCAACCTTTTTGATG
    |||||  |   ||  |  | | ||||  || |  |         | |||    |  ||  | || ||    |||| ||           ||||||||  |||||||||||||| || ||||| ||||||||||| ||||| ||  ||||||| ||||| || |||||||| || || ||||| ||  ||||||| |
gtatgtatgccttgaatgaggttcttagagctttatgtaaaaggtgcgcatttctcagaattatactcgtgagttcttaactgttcctccaccaattggttg-cagGATATCTATTATCGTAAAGCTAAAGAAGAAGGATGGCGTGCAAGAAGTGCTTTTAAGCTTCTTCAGATTGATGAAGAATTTAATATTTTTGAAG

upper sequence: GLYMA15G07970.4 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g01960.t01 (Vitis vinifera), 3'ss of exon 1
gtatggttgatttgtctttcagagtgttc---ttcatctttttggggggttgcattc----atgcttagctaa-----attggttttcagGATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCGTTTAAACTCCTTCAGATAGACGAGGAATTCAACCTTTTTGATG
||  | || |||| || |||  | |  |    ||||  ||   | | | || ||||      |  ||||  ||     ||| |||| ||||||||||| || || |||||||| |||||||||||||| ||||||||||| || |||||||||||||| || |||||||||||| | ||||| |
gtgggtttaatttctcattctaatttcttctgttcaatttccggtgtgttttcatttttcagtttttagtaaaggttgattagtttgcagGATATCTACTATCGTAAAGCAAAGGAAGAAGGTTGGCGTGCTCGAAGTGCCTTCAAACTCCTTCAGATTGATGAGGAATTCAACATATTTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298195652|gb|HO044043.1|HO044043
EST:     ATTTGTGGCACAGCAAGTGAGCGATGGGGAGAGCTTCAAGGGATAAGAGG                         GATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCG
genomic: ATTTGTGGCACAGCAAGTGAGCGATGGGGAGAGCTTCAAGGGATAAGAGGgtatggttga ... tggttttcagGATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCG
EST: gi|151411265|gb|EV281076.1|EV281076
EST:     ATTTGTGGCACAGCAAGTGAGCGATGGGGAGAGCTTCAAGGGATAAGAGG                         GATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCG
genomic: ATTTGTGGCACAGCAAGTGAGCGATGGGGAGAGCTTCAAGGGATAAGAGGgtatggttga ... tggttttcagGATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttcttcatctttttggggggttgcattcatgcttagctaaattggttttcagGATATCTATTACCGGAAAGCAAAAGAAGAAGGTTGGCGAGCTCGAAGTGCGTTTAAACTCCTTCAGATAGACGAGGAATTCAACCTTTTTGATG
                                     agctaaa  putative branch site (score: 3)
                                                ttttc  putative PPT
         atcttttt  TA-rich tract