1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatcttttcctcaaattcctattactttgcagcatacctataaattctctgttttgaatctcttactatcttgttttttcaatattttttattttgtgtgtgtggttctcagGCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCATTAGCAGTAACTGTGATCTCCTCAGTTGCTTGGATTGGATATGAG
species | Glycine max |
transcript | GLYMA15G05370.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAG GCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCAEST: gi|26269350|gb|CA820413.1|CA820413
genomic: TGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAGgtatcttttc ... tggttctcagGCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCA
EST: TGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAG GCAAAACGAAGTTCTGTTAAGTTGGATATATATAGGAAGTTCTCAAATGCAEST: gi|58018482|gb|CX705224.1|CX705224
genomic: TGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAGgtatcttttc ... tggttctcagGCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCA
EST: TGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAG GCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCAEST: gi|58019533|gb|CX706275.1|CX706275
genomic: TGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAGgtatcttttc ... tggttctcagGCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCA
EST: TGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAG GCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCAEST: gi|51336251|gb|CO980117.1|CO980117
genomic: TGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAGgtatcttttc ... tggttctcagGCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCA
EST: TGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAG GCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCAEST: gi|9439998|gb|BE440509.1|BE440509
genomic: TGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAGgtatcttttc ... tggttctcagGCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCA
EST: TGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAG GCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCA
genomic: TGATATTATGGATTTTTACATCTCTTTCAAGAACACTGGAGCAGTTACAGgtatcttttc ... tggttctcagGCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCA
atctcttactatcttgttttttcaatattttttattttgtgtgtgtggttctcagGCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCATTAGCAGTAACTGTGATCTCCTCAGTTGCTTGGATTGGATATGAG
ctcttac putative branch site (score: 3)
ttctc putative PPT
ttactatcttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcttttcctcaaattcctattactttgcagcatacctataaattctctgttttgaatctcttactatcttgttttttcaatattttttattttgtgtgtgtggttctcagGCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCATTAGCAGTAACTGTGATCTCCTCAGTTGCTTGGATTGGATATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC