Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattgatctctgttggacatttatcatccaagtttacagtttcttctgatgttggatttctatgtttaggccatttatcaggaattgtattgatttccagATTGGTTGGAAAGAATATTATCAGAAAATAAACCGGCTCCAAAGCTTGTTACTGTTGTAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCT

Basic information

species Glycine max
transcript GLYMA15G01520.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01520.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv09s0002g05250.t01 (Vitis vinifera), 3'ss of exon 5
---gatt----gatctctgttggacatttatcatccaagtttacagtttcttctgatgttggatttctatgtttaggccatttatcaggaattgtattgatttccagATTGGTTGGAAAGAATATTATCAGAAAATAAACCGGCTCCAAAGCTTGTTACTGTTGTAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCT
     ||    ||   ||| || | ||| | |||   |||    |||  || |   |||   || |  | ||  |   |||| || |    || | ||||| | ||||||||||||||| |||||| |  |||| |||||| || |||||| |||| |||||||| ||||| || || |||||||| || |||||||||||||| ||
attagttctaagaaaactgatgtatattcaacat--gagtaaggagtggctacc--tgtacaatatggaggt--aaatcattaattaatg-ttatcttgatctgcagATTGGTTGGAAAAAATATTGTTGGAAACTAAACCAGCACCAAAGGTTGTAACTGTTGTGAATCCTGGTAACCCATCTGGGACCTACATTCCAGAGCCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058655|gb|CA801569.1|CA801569
EST:     CAATATTCTAGTTGGTCCTGGTAGCTCAGACACACTCCATCCTGATGCAG                         ATTGGTTGGAAAGAATATTATCAGAAACTAAACCACCTCCAAAGCTTGTTA
genomic: CAATATTCTAGTTGGTCCTGGTAGCTCAGACACACTCCATCCTGATGCAGgtaagaagct ... tgatttccagATTGGTTGGAAAGAATATTATCAGAAAATAAACCGGCTCCAAAGCTTGTTA
EST: gi|7233283|gb|AW568631.1|AW568631
EST:     CAATATTCTAGTTGGTCCTGGTAGCTCAGACACACTCCATCCTGATGCAG                         ATTGGTTGGCAAGAATATTATCAGAAAATAAACCGGCTCCAAAGCTTGTTA
genomic: CAATATTCTAGTTGGTCCTGGTAGCTCAGACACACTCCATCCTGATGCAGgtaagaagct ... tgatttccagATTGGTTGGAAAGAATATTATCAGAAAATAAACCGGCTCCAAAGCTTGTTA
EST: gi|208247343|gb|GE048959.1|GE048959
EST:     CAATATTCTAGTTGGTCCTGGTAGCTCAGACACACTCCATCCTGATGCAG                         ATTGGTTGGAAAGAATATTATCAGAAACTAAACCACCTCCAAAGCTTGTTA
genomic: CAATATTCTAGTTGGTCCTGGTAGCTCAGACACACTCCATCCTGATGCAGgtaagaagct ... tgatttccagATTGGTTGGAAAGAATATTATCAGAAAATAAACCGGCTCCAAAGCTTGTTA
EST: gi|13477614|gb|BG507424.1|BG507424
EST:     CAATATTCTAGTTGGTCCTGGTAGCTCAGACACACTCCATCCTGATGCAG                         ATTGGTTGGAAAGAATATTATCAGAAAATAAACCGGCTCCAAAGCTTGTTA
genomic: CAATATTCTAGTTGGTCCTGGTAGCTCAGACACACTCCATCCTGATGCAGgtaagaagct ... tgatttccagATTGGTTGGAAAGAATATTATCAGAAAATAAACCGGCTCCAAAGCTTGTTA
EST: gi|4313781|gb|AI460900.1|AI460900
EST:     CAATATTCTAGTTGGTCCTGGTAGCTCAGACACACTCCATCCTGATGCAG                         ATTGGTTGGAAAGAATATTATCAGAAAATAAACCGGCTCCAAAGCTTGTTA
genomic: CAATATTCTAGTTGGTCCTGGTAGCTCAGACACACTCCATCCTGATGCAGgtaagaagct ... tgatttccagATTGGTTGGAAAGAATATTATCAGAAAATAAACCGGCTCCAAAGCTTGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatgttggatttctatgtttaggccatttatcaggaattgtattgatttccagATTGGTTGGAAAGAATATTATCAGAAAATAAACCGGCTCCAAAGCTTGTTACTGTTGTAAATCCAGGCAATCCATCTGGAACTTACATTCCAGAGCCCCT
                                          tattgat  putative branch site (score: 3)
                                                tttcc  CT-rich tract
                                     aattgtattgattt  TA-rich tract