1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taatcaatagtttctttattttactattggcaatactattttctctaatatttcttcctttttacccttgataatggagtgctgtgtgcttcctttgcagAGCAATGTGAGAAGGATAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAG
species | Glycine max |
transcript | GLYMA14G05570.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTCCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTTG AGCAATGTGAGAAGGATAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAEST: gi|15662540|gb|BI699911.1|BI699911
genomic: CCTCCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTTGgtatgttctt ... tcctttgcagAGCAATGTGAGAAGGATAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAA
EST: CCTCCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTTG AGCAATGTGAGAAGGATAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGEST: gi|9902771|gb|BE611739.1|BE611739
genomic: CCTCCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTTGgtatgttctt ... tcctttgcagAGCAATGTGAGAAGGATAAGGAGCGTGTTCTGGTTCATTGCATGTCAGG
EST: CCTCCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTTG AGCAATGTGAGAAGGATAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAA
genomic: CCTCCCAGATGACAAAACTTTGCCATTTGATGAAGCAATTCAGTTTCTTGgtatgttctt ... tcctttgcagAGCAATGTGAGAAGGATAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAA
taatatttcttcctttttacccttgataatggagtgctgtgtgcttcctttgcagAGCAATGTGAGAAGGATAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAG
tgcttccttt CT-rich tract
ttgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatcaatagtttctttattttactattggcaatactattttctctaatatttcttcctttttacccttgataatggagtgctgtgtgcttcctttgcagAGCAATGTGAGAAGGATAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - -ctattgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgc