Sequence
atgc intronic sequence ATGC exonic sequence...gaagggattggttaagtggaagtgagttgacactcggtctcaaagagcttagcagttcttatgaatgtcatgatgataattagttttgtgcttgttgcagTGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATCTATTGGATGGAATATGCACATCGGATGTGGGGAAGGGCGCTAGGAGTTATGTTTGCTTTG
Basic information
species | Glycine max |
transcript | GLYMA14G01420.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G01420.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv19s0015g01340.t01 (Vitis vinifera), 3'ss of exon 2
gaagggattggttaagtggaagtgag-----ttgacactcggtctcaaagagcttagcagttcttatgaatgtcatgatgataattagttttgtgcttgttgcagTGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATCTATTGGATGGAATATGCACATCGGATGTGGGGAAGGGCGCTAGGAGTTATGTTTGCTTTG
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----gactctaatatatgtcagttacaccttttaatttgaagtttctatgta-ttgcaaacgggagtggaagttcaattggtctttaacctcttgcctcttgcagTGTAAACAAAGGGATGAGTATTGAAGATTTTAAATTCATATATTGGATGGAGTATGCACATCGTATGTGGGGAAGGGCATTGGGTATCATGTTTGCTCTG
upper sequence: GLYMA14G01420.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S311_41V6.1 (Physcomitrella patens), 3'ss of exon 3
--------------------------------------------------------------gaagggattggttaagtggaagtgagttgacactcggtctcaa--agagcttagcagttctta--tgaatgtcatga-tgataattagttttgtgcttgttgcagTGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATCTATTGGATGGAATATGCACATCGGATGTGGGGAAGGGCGCTAGGAGTTATGTTTGCTTTG
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gtgagtgttcttagatagcgaggaaggccatcatatgacggcaacaacatgagcttttacgtcatggatcttacttctcgttcttgacttaaattgcgaattgggttggatctttacattctgcagcttctcctcgtgaatgttgccaaatgttggtcatgatgcagGGTAAATAAGGGGATGAGTCTTAATGAGTTCAAATTCATCTTCTGGATGGAATATGCGCATCGAATGTGGGGTCGGGCTTTGGGCATCGTTTTTGCTGGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298167990|gb|HO013253.1|HO013253EST: GAATGGTTGCAAGAGTTTGACAAATATAAGCAGTCACCTGAGTACAAGCG TGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATCTATTGGATGGA
genomic: GAATGGTTGCAAGAGTTTGACAAATATAAGCAGTCACCTGAGTACAAGCGgtaaactgaa ... cttgttgcagTGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATCTATTGGATGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agcttagcagttcttatgaatgtcatgatgataattagttttgtgcttgttgcagTGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATCTATTGGATGGAATATGCACATCGGATGTGGGGAAGGGCGCTAGGAGTTATGTTTGCTTTG
atgataattagtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaagggattggttaagtggaagtgagttgacactcggtctcaaagagcttagcagttcttatgaatgtcatgatgataattagttttgtgcttgttgcagTGTTAACAGAGGCATGAAGATTGAAGAATTCAAATTCATCTATTGGATGGAATATGCACATCGGATGTGGGGAAGGGCGCTAGGAGTTATGTTTGCTTTG
- -gggattg
- - - - - - - - - - - - - -tgacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtg