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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttttagtttatgagaatgcattgattcagttagaatcattctgtccctttctctctttagtcaaatgtgatgaaatgtattctatttgttggtttgctttgcttggtcaattctgttttctgaaactatttcattgtatgaagGGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG

Basic information

species Glycine max
transcript GLYMA13G41580.5
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G41580.5 (Glycine max), 3'ss of exon 2
lower sequence: AT3G20870.1 (Arabidopsis thaliana), 3'ss of exon 2
gtagttttagtttatgagaatgcattgattcagttagaatcattctgtccctttctctctttagtcaaatgtgatgaaatgtattctatttgttggtttgctttgcttggtcaattctgttttctgaaactatt--tcattgtatgaagGGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG
                                               |    || |  |   | ||   ||| | ||||  | |    |  |    |||| |     | ||   || | ||  |||| | | |       | | |  ||||||||||| | ||| ||||| | |||||||||||||| ||||||||||| |||||| | |||||  | || ||||| |||| |||||| |||
-----------------------------------------------tgttcttgtaccaacattcttttgt-acgaaacttttcacttgggaaaatttgatccatcttgtaggttgt-ttaactgatattttcaactcctttttacagGGTTTTGCTTCAGGTCTGATGTTGAGCATATCGTTCTTGGATTTGGCTCATAATGCTATAAACTCTATTGGGTTCTTTAAAGCCAACCTCTGG

upper sequence: GLYMA13G41580.5 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0004g01860.t01 (Vitis vinifera), 3'ss of exon 2
gtagttttagtttatgagaatgcattgattcagttagaatcattctgtccctttctctctttagtcaaatgtgatgaaatgtattctatttgttggtttgctttgcttggtcaattctgttttctgaaactatttcattgtatgaagGGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG
                               ||  ||     |||||   | |  ||   | |||  || |   | | | | |||| |      | |||  | |||   || || |    |||    | ||   |   |  ||| |||| |||||||| ||  | ||||| |||||||| ||| | ||||||||||| ||||||||||||||  | |||||||| ||||| |||||||||
------------------------------aagccagg---gttctggagcatcatc---taagtttaa-gctgtcagaggcattcca------gatttattatgc--agtaaaattg--tttggatatctggatttcttcatgtagGGATTTGCTGCAGGCCTCATGCTGAGCATATCTTTCCTAGATTTGGCTCATAATGCTTTGAACTCCATCGGCTTCTTAAAAGGAAACCTTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300198|gb|FG989320.1|FG989320
EST:     TTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCTATTACAG                         GGTTTTGCTGCTGG-TTGATGCTTAGCATATCGTTCTTTGATTTGGCTCAC
genomic: TTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCTATTACAGgtagttttag ... ttgtatgaagGGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCAC
EST: gi|298174471|gb|HO014616.1|HO014616
EST:     TTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCTATTACAG                         GGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCAC
genomic: TTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCTATTACAGgtagttttag ... ttgtatgaagGGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCAC
EST: gi|213617692|gb|DB967222.1|DB967222
EST:     TTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCTATTACAG                         GGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCAC
genomic: TTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCTATTACAGgtagttttag ... ttgtatgaagGGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCAC
EST: gi|298198295|gb|HO039834.1|HO039834
EST:     TTGTAATTGTTAATAAAGCTCCCAGTTTAAAGATGCTTGGGCTATTACAG                         GGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCAC
genomic: TTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCTATTACAGgtagttttag ... ttgtatgaagGGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCAC
EST: gi|192323380|gb|FK017081.1|FK017081
EST:     TTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCTATTACAG                         GGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCAC
genomic: TTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCTATTACAGgtagttttag ... ttgtatgaagGGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCAC
EST: gi|298167335|gb|HO010774.1|HO010774
EST:     TTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCTATTACAG                         GGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCAC
genomic: TTGTAATTGTTAATAAAGCTCCCAGTTTGAAGATGCTTGGGCTATTACAGgtagttttag ... ttgtatgaagGGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtttgctttgcttggtcaattctgttttctgaaactatttcattgtatgaagGGTTTTGCTGCTGGTTTGATGCTTAGCATATCGTTCTTTGATTTGGCTCACAATGCTTTGAACTCATTGGGCTTCTTGAAAGGCAACCTTTGG
                                        tttcatt  CT-rich tract
                                  aaactattt  TA-rich tract