1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgtcacgtgactctgttcttattacacgcaaaaaacaacctatgattgtgtcgtgtgctcctgttctgtgtctcttacgttccctaagcttaaacttttaaccacttaacagatagacttcatgtgtggctgtgatcgttccgagtgttgaaattacggttttgtccttttccttttctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA
species | Glycine max |
transcript | GLYMA13G24360.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|7326908|gb|AW620706.1|AW620706
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|15287940|gb|BI471831.1|BI471831
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|209724251|gb|BW662892.1|BW662892
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAEST: gi|15664239|gb|BI701610.1|BI701610
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|26056377|gb|CA799291.1|CA799291
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|213594399|gb|DB973640.1|DB973640
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|22524479|gb|BU083290.1|BU083290
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: CCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|20076102|gb|BQ094885.1|BQ094885
genomic: CCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAATAAGAAGATCTACAATTAEST: gi|31561929|gb|CD487767.1|CD487767
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|10845918|gb|BF068938.1|BF068938
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: CGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|120530166|gb|EH258300.1|EH258300
genomic: CGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTTCAATTAEST: gi|209725000|gb|BW659746.1|BW659746
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACACCCTTAACAAGAAGATCTACAATTAEST: gi|22524883|gb|BU083694.1|BU083694
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|20449743|gb|BQ253867.1|BQ253867
genomic: TCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|209710025|gb|BW653532.1|BW653532
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|15338168|gb|BI498832.1|BI498832
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|9564410|gb|BE473919.1|BE473919
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|5760087|gb|AI965450.1|AI965450
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|8404364|gb|BE059998.1|BE059998
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|17964192|gb|BM270931.1|BM270931
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: CCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|13481992|gb|BG511335.1|BG511335
genomic: CCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: ACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|209707100|gb|BW683287.1|BW683287
genomic: ACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|23057815|gb|BU578270.1|BU578270
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: CTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|209721962|gb|BW669348.1|BW669348
genomic: CTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|9819687|gb|BE555200.1|BE555200
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|31560884|gb|CD486722.1|CD486722
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|12774829|gb|BG239777.1|BG239777
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: ATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|20448949|gb|BQ253073.1|BQ253073
genomic: ATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: CCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|17023242|gb|BM094276.1|BM094276
genomic: CCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|9900710|gb|BE609678.1|BE609678
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: CGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|20449432|gb|BQ253556.1|BQ253556
genomic: CGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|213615016|gb|DB957054.1|DB957054
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTAEST: gi|26048112|gb|CA784701.1|CA784701
genomic: TTTTTCGAGAAGTATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
EST: ATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTG GTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
genomic: ATCCGGCTCTGGTGACCGGATTCTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTA
gtgatcgttccgagtgttgaaattacggttttgtccttttccttttctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA
ttctgat putative branch site (score: 3)
cggttttgtccttttc CT-rich tract
ttgaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtcacgtgactctgttcttattacacgcaaaaaacaacctatgattgtgtcgtgtgctcctgttctgtgtctcttacgttccctaagcttaaacttttaaccacttaacagatagacttcatgtgtggctgtgatcgttccgagtgttgaaattacggttttgtccttttccttttctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTTAACAAGAAGATCTACAATTACTTCCCCTATCCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG