1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttaggagtctgctttttcagctctattgtctatattctactgggcattatttgtcactaactaatgacttttgtcagATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAGTGGCACATGTGCCTCCTCCCCGTCCAAAGCGCAAAGCTGCTCATCCTT
species | Glycine max |
transcript | GLYMA13G19910.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAG ATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAEST: gi|298174999|gb|HO017994.1|HO017994
genomic: GGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGgttaggagtc ... cttttgtcagATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACA
EST: GGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAG ATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAEST: gi|27809002|gb|CB063424.1|CB063424
genomic: GGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGgttaggagtc ... cttttgtcagATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACA
EST: GGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAG ATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAEST: gi|209729061|gb|BW651786.1|BW651786
genomic: GGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGgttaggagtc ... cttttgtcagATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACA
EST: GGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAG ATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACA
genomic: GGGACTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGgttaggagtc ... cttttgtcagATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACA
ctattgtctatattctactgggcattatttgtcactaactaatgacttttgtcagATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAGTGGCACATGTGCCTCCTCCCCGTCCAAAGCGCAAAGCTGCTCATCCTT
cttttgtc CT-rich tract
tatattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaggagtctgctttttcagctctattgtctatattctactgggcattatttgtcactaactaatgacttttgtcagATTCGAAGCCATGCTCAGAAGTACTTCTTGAAAGTTCAAAAGAATGGGACAGTGGCACATGTGCCTCCTCCCCGTCCAAAGCGCAAAGCTGCTCATCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT