1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttcccctccagaaacattatcaaatgtcttagttggtacagaatatttcatgttactgtgagtgtgagcactgggagtgtaactgggattattgtgcagTTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTCAAAAGCGGCCTTAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTG
species | Glycine max |
transcript | GLYMA13G18730.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGAGGTCAGAAAGGCCATCAAGGACCTTTTCCCTAATGAAAATGAG TTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTCEST: gi|207821460|gb|GD790609.1|GD790609
genomic: TTGAAGAGGTCAGAAAGGCCATCAAGGACCTTTTCCCTAATGAAAATGAGgtaacctatg ... tattgtgcagTTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTC
EST: TTGAAGAGGTCAGAAAGGCCATCAAGGACCTTTTCCCTAATGAAAATGAG TTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTCEST: gi|208031111|gb|GD827539.1|GD827539
genomic: TTGAAGAGGTCAGAAAGGCCATCAAGGACCTTTTCCCTAATGAAAATGAGgtaacctatg ... tattgtgcagTTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTC
EST: TTGAAGAGGTCAGAAAGGCCATCAAGGACCTTTTCCCTAATGAAAATGAG TTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTCEST: gi|213618122|gb|DB965279.1|DB965279
genomic: TTGAAGAGGTCAGAAAGGCCATCAAGGACCTTTTCCCTAATGAAAATGAGgtaacctatg ... tattgtgcagTTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTC
EST: TTGAAGAGGTCAGAAAGGCCATCAAGGACCTTTTCCCTAATGAAAATGAG TTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTCEST: gi|209716489|gb|BW676939.1|BW676939
genomic: TTGAAGAGGTCAGAAAGGCCATCAAGGACCTTTTCCCTAATGAAAATGAGgtaacctatg ... tattgtgcagTTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTC
EST: TTGAAGAGGTCAGAAAGGCCATCAAGGACCTTTTCCCTAATGAAAATGAG TTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTCEST: gi|298184933|gb|HO030146.1|HO030146
genomic: TTGAAGAGGTCAGAAAGGCCATCAAGGACCTTTTCCCTAATGAAAATGAGgtaacctatg ... tattgtgcagTTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTC
EST: TTGAAGAGGTCAGAAAGGCCATCAAGGACCTTTTCCCTAATGAAAAAGAG TTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTCEST: gi|298188285|gb|HO034978.1|HO034978
genomic: TTGAAGAGGTCAGAAAGGCCATCAAGGACCTTTTCCCTAATGAAAATGAGgtaacctatg ... tattgtgcagTTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTC
EST: TTGAAGAGGTCAGAAAGGCCATCAAGGACCTTTTCCCTAATGAAAATGAG TTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTC
genomic: TTGAAGAGGTCAGAAAGGCCATCAAGGACCTTTTCCCTAATGAAAATGAGgtaacctatg ... tattgtgcagTTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTC
atttcatgttactgtgagtgtgagcactgggagtgtaactgggattattgtgcagTTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTCAAAAGCGGCCTTAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTG
gtgtaac putative branch site (score: 3)
attattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcccctccagaaacattatcaaatgtcttagttggtacagaatatttcatgttactgtgagtgtgagcactgggagtgtaactgggattattgtgcagTTGGTGGTTAAGAGTCAAATTTTAGCCGGTGGAAGAGGTTTGGGAACTTTCAAAAGCGGCCTTAAGGGAGGAGTGCACATTGTTAAGACTGACCAGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- -cccctcc
- - - - - - - - - - - - - - - - gttggta
- - - - - - - - - - - - - - - - - - - - - - - - tcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggagtg