1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgaacctacgtctataccctaaccccagtcaataacctgttttttggtatgctttgattaatttcatttcaagtattaacgtagttgctaatatattcagGGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGAG
species | Glycine max |
transcript | GLYMA13G18660.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCT GGAGAAATTCCGCTCCAAGGAGACTCCTCTGCTGAACATATGATCTTTGGAEST: gi|6341834|gb|AW164658.1|AW164658
genomic: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCTgtgagttctt ... atatattcagGGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGA
EST: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCT GGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGAEST: gi|298190455|gb|HO032576.1|HO032576
genomic: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCTgtgagttctt ... atatattcagGGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGA
EST: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCT GGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGAEST: gi|298196491|gb|HO041234.1|HO041234
genomic: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCTgtgagttctt ... atatattcagGGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGA
EST: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCT GGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGAEST: gi|151400588|gb|EV270402.1|EV270402
genomic: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCTgtgagttctt ... atatattcagGGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGA
EST: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCT GGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGAEST: gi|192309352|gb|FK000560.1|FK000560
genomic: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCTgtgagttctt ... atatattcagGGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGA
EST: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCT GGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGAEST: gi|58017128|gb|CX703870.1|CX703870
genomic: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCTgtgagttctt ... atatattcagGGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGA
EST: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCT GGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGAEST: gi|151394486|gb|EV264357.1|EV264357
genomic: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCTgtgagttctt ... atatattcagGGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGA
EST: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCT GGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGAEST: gi|298185222|gb|HO030435.1|HO030435
genomic: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCTgtgagttctt ... atatattcagGGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGA
EST: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCT GGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGA
genomic: GAGATCTCGCTTATTTGGGCGGATCTTGGAGCAAAAACGTTGGCTCCGCTgtgagttctt ... atatattcagGGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGA
ggtatgctttgattaatttcatttcaagtattaacgtagttgctaatatattcagGGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGAG
tttgattaatttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaacctacgtctataccctaaccccagtcaataacctgttttttggtatgctttgattaatttcatttcaagtattaacgtagttgctaatatattcagGGAGAAATTCCGCTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - ctaaccc
- - - - - - - - - - - - - - - - - -cctgttt
- - - - - - - - - - - - - - - - - - - - - - - gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgcta