1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctttgctgatgtaatatatccatcaagtatcgaggtaaggtttttcaggatatgagcctttactgcttttatcttatgtgaaatacttttctgttggcagGTGGCCAAATCCAATCCTGAGAAGTCCATTCCTTTAACTGTTCTTAAAAGTGCCAAGGGCCTAGCAATTTTAACAGTTGCTAAAGCTGGTGCACTAGTCT
species | Glycine max |
transcript | GLYMA13G17500.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAGCATGAGATTTATAAAGCATCTAATACATTAAGAAACTACTGTCAG GTGGCCAAATCCAATCCTGAGAAGTCCATTCCTTTAACTGTTCTTAAAAGTEST: gi|208056985|gb|GD855126.1|GD855126
genomic: TGGAGCATGAGATTTATAAAGCATCTAATACATTAAGAAACTACTGTCAGgttagtcaat ... ctgttggcagGTGGCCAAATCCAATCCTGAGAAGTCCATTCCTTTAACTGTTCTTAAAAGT
EST: TGGAGCATGAGATTTATAAAGCATCTAATACATTAAGAAACTACTGTCAG GTGGCCAAATCCAATCCTGAGAAGTCCATTCCTTTAACTGCTCTTAAAAGTEST: gi|192319363|gb|FK009905.1|FK009905
genomic: TGGAGCATGAGATTTATAAAGCATCTAATACATTAAGAAACTACTGTCAGgttagtcaat ... ctgttggcagGTGGCCAAATCCAATCCTGAGAAGTCCATTCCTTTAACTGTTCTTAAAAGT
EST: TGGAGCATGAGATTTATAAAGCATCTAATACATTAAGAAACTACTGTCAG GTGGCCAAATCCAATCCTGAGAAGCCCATTCCTTTAACTGTTCTTAAAAGTEST: gi|15813292|gb|BI785567.1|BI785567
genomic: TGGAGCATGAGATTTATAAAGCATCTAATACATTAAGAAACTACTGTCAGgttagtcaat ... ctgttggcagGTGGCCAAATCCAATCCTGAGAAGTCCATTCCTTTAACTGTTCTTAAAAGT
EST: TGGAGCATGAGATTTATAAAGCATCTAATACATTAAGAAACTACTGTCAG GTGGCCAAATCCAATCCTGAGAAGTCCATTCCTTTAACTGTTCTTAAAAGT
genomic: TGGAGCATGAGATTTATAAAGCATCTAATACATTAAGAAACTACTGTCAGgttagtcaat ... ctgttggcagGTGGCCAAATCCAATCCTGAGAAGTCCATTCCTTTAACTGTTCTTAAAAGT
caggatatgagcctttactgcttttatcttatgtgaaatacttttctgttggcagGTGGCCAAATCCAATCCTGAGAAGTCCATTCCTTTAACTGTTCTTAAAAGTGCCAAGGGCCTAGCAATTTTAACAGTTGCTAAAGCTGGTGCACTAGTCT
cttttctgtt CT-rich tract
ttttatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgctgatgtaatatatccatcaagtatcgaggtaaggtttttcaggatatgagcctttactgcttttatcttatgtgaaatacttttctgttggcagGTGGCCAAATCCAATCCTGAGAAGTCCATTCCTTTAACTGTTCTTAAAAGTGCCAAGGGCCTAGCAATTTTAACAGTTGCTAAAGCTGGTGCACTAGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- -tgctgat
- - - - - - - - - -ccatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatac