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...gcttgactggctggatttggtgtactttatacttttgctgatctatattgtgatcaaataaatggtacttatttcattgaatttttatttggcagtgaagATGGAAGACTTAGCTGTGGTTATTCAAGTTTTAGGGGAAAGAGAGTGACAATGGAAGATTTTTATGATATTAAGACATTGAAGATTGGTGGCCAATCAAT
species | Glycine max |
transcript | GLYMA13G08090.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAG TEST: gi|120531892|gb|EH260025.1|EH260025
genomic: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAGgtgaatatga ... ggcagtgaag-
EST: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAG TEST: gi|120531892|gb|EH260025.1|EH260025
genomic: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAGgtgaatatga ... ggcagtgaag-
EST: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAG TEST: gi|7640592|gb|AW734820.1|AW734820
genomic: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAGgtgaatatga ... ggcagtgaag-
EST: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAG TEST: gi|7640592|gb|AW734820.1|AW734820
genomic: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAGgtgaatatga ... ggcagtgaag-
EST: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAG TEST: gi|7640592|gb|AW734820.1|AW734820
genomic: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAGgtgaatatga ... ggcagtgaag-
EST: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAG TEST: gi|298196173|gb|HO044564.1|HO044564
genomic: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAGgtgaatatga ... ggcagtgaag-
EST: GATGGTCGATTTGCTAGTGGAGGGTGGAAAAGTGAAGEST: gi|254313836|gb|GR831465.1|GR831465
genomic: GATGGTCGATTTGCTAGTGGAGGGTGG--AA---AAGgtgaatatga ... ggcagt
EST: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAG TEST: gi|254313836|gb|GR831465.1|GR831465
genomic: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAGgtgaatatga ... ggcagtgaag-
EST: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAG TEST: gi|254313836|gb|GR831465.1|GR831465
genomic: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAGgtgaatatga ... ggcagtgaag-
EST: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAG TEST: gi|209700604|gb|BW670420.1|BW670420
genomic: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAGgtgaatatga ... ggcagtgaag-
EST: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAG ATGGAAGACTTAGCTGTGGTTATTCAAGTTTTAGGGGAAAGAGAGTGACAAEST: gi|151411248|gb|EV281059.1|EV281059
genomic: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAGgtgaatatga ... ggcagtgaagATGGAAGACTTAGCTGTGGTTATTCAAGTTTTAGGGGAAAGAGAGTGACAA
EST: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGGAAAAGTGAAG
genomic: ATGCCAGAGAAAGATGATGATGGTCGATTTGCTAGTGGAGGGTGG--AA---AAGgtgaatatga ... ggcagt
tattgtgatcaaataaatggtacttatttcattgaatttttatttggcagtgaagATGGAAGACTTAGCTGTGGTTATTCAAGTTTTAGGGGAAAGAGAGTGACAATGGAAGATTTTTATGATATTAAGACATTGAAGATTGGTGGCCAATCAAT
aaataaatggtactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttgactggctggatttggtgtactttatacttttgctgatctatattgtgatcaaataaatggtacttatttcattgaatttttatttggcagtgaagATGGAAGACTTAGCTGTGGTTATTCAAGTTTTAGGGGAAAGAGAGTGACAATGGAAGATTTTTATGATATTAAGACATTGAAGATTGGTGGCCAATCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
gcttgac
- - - -tggctgg
- - - - - - - -tttggtg
- - - - - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa