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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatctccattctttaatcactgtgctttcaggttatctcttatttacttttctctgttcaaaacaaattttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG

Basic information

species Glycine max
transcript GLYMA12G34820.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34820.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G30410.1 (Arabidopsis thaliana), 3'ss of exon 2
-------------------------------------------gtatatctccattcttta--atc----actgtgctttcaggttatctctt-atttacttttctctgttcaaaacaaattttga--cagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG
                                           |    |||   ||| | |  |||    | ||   | |   | | | | |  | ||  ||||  ||  ||     |  |  |||  ||||||||||| |||| ||||||||||||||||||||| || |||| ||| || || ||| | || ||||| ||| | ||       |||
gtacagatttcattgtttatctctctgtattcgaagattcggagcccgtctttgttcgtcagaatctagaaatgctgtgttgtgctgtgtttagacttggtttttcctaatctgtgtatgtggtgatgcagGAAAATGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTG

upper sequence: GLYMA12G34820.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv15s0021g01180.t01 (Vitis vinifera), 3'ss of exon 2
----------------gtatatctccattctttaat---cactgtgctttcaggttatctcttattta---cttttctctgttcaaaacaaattttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG
                 |  || |  ||| | | ||      |||  | ||  ||| | ||  ||  |   |   | | | |||   |  | ||| | |||||||||||  ||||||| || ||||||||||||||||| || ||||||||||| |||||| |  | || ||  | ||||||   |||
aagtgaagaagcagaaatcaatttttattttgtgatatattttgtagtatcctgttttttcacatcaaaaccccctttatcttcttgatca-tttgggcagGAAAATGTGCTGGCTGAATCAAGGATGATGATTCCTGATTGTCGCAAGCGCCTGGAGGCCTCACTAGCTGATCTAAAAGGAACTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9564281|gb|BE473790.1|BE473790
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GANAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|15287556|gb|BI471447.1|BI471447
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|7042468|gb|AW472362.1|AW472362
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|192327965|gb|FK023826.1|FK023826
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|7285517|gb|AW598004.1|AW598004
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|31475472|gb|CD417500.1|CD417500
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|192304981|gb|FG996113.1|FG996113
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGACCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|213603291|gb|DB981948.1|DB981948
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|10238770|gb|BE807658.1|BE807658
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|192333924|gb|FK024737.1|FK024737
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|33387458|gb|CA850665.1|CA850665
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|21286136|gb|BQ474007.1|BQ474007
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|254336864|gb|GR843043.1|GR843043
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|13791202|gb|BG653793.1|BG653793
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|192332178|gb|FK023827.1|FK023827
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|151406447|gb|EV276262.1|EV276262
EST:     CTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|10255581|gb|BE823347.1|BE823347
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
EST: gi|192333115|gb|FK026444.1|FK026444
EST:     CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAG                         GAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC
genomic: CAGCTGATATGAAGGAAAAAGGAGCCGATCCCTATGATCTCAAGCAACAGgtatatctcc ... attttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctttcaggttatctcttatttacttttctctgttcaaaacaaattttgacagGAAAATGTCTTGGCTGAGTCTAGGATGATGATTCCTGACTGCCGCAAGCGCCTTGAGGCCGCTTTGGCAGACTTGAAAGGATTATTG
                                   ttcaaaacaaatttt  TA-rich tract