1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...tgcactggatatattgttatgtatctccagaagtcctgattgtgataatatcctgtatatattttttatttaccaacatgaactgcattttgcttgacagGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAAATCAATAAAGCTGGTCTAATGTCTTCTCCTTCAGTCTTGCAAACAGATA
species | Glycine max |
transcript | GLYMA12G07740.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTANATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAG GTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAAEST: gi|213593777|gb|DB957897.1|DB957897
genomic: TTAAATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAGgtaatctaca ... tgcttgacagGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAA
EST: TTAAATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAG GTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAAEST: gi|209700338|gb|BW664375.1|BW664375
genomic: TTAAATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAGgtaatctaca ... tgcttgacagGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAA
EST: TTAAATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAG GTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAA
genomic: TTAAATGCTGAAAAAAGCCCCTTCCAGAGAATATTTGTTAACCAGgtaatctaca ... tgcttgacagGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAA
taatatcctgtatatattttttatttaccaacatgaactgcattttgcttgacagGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAAATCAATAAAGCTGGTCTAATGTCTTCTCCTTCAGTCTTGCAAACAGATA
ttttgctt CT-rich tract
tatatattttttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcactggatatattgttatgtatctccagaagtcctgattgtgataatatcctgtatatattttttatttaccaacatgaactgcattttgcttgacagGTAAAGCGATGTGCAGAAATGTCAAGAAAGCTACGATTCTTCGAGGATCAAATCAATAAAGCTGGTCTAATGTCTTCTCCTTCAGTCTTGCAAACAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
tgcactg
- - - - - - - tgttatg
- - - - - - - - - - - - ctccaga
- - - - - - - - - - - - - - - - - - -gattgtg
- - - - - - - - - - - - - - - - - - - - - - - - - tcctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattt