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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatttactcttttttatttaaatttgttggtatcctttgctcattagttcacattattattggtctatttactatatttccagAGGGTCACCTCTCTTCTGGATTGGTGTTGGTGTTGGGCTTTCTGCACTGTTTTCAGTG

Basic information

species Glycine max
transcript GLYMA11G31810.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G31810.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G16620.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaataatttactcttttttatttaaatttgttggtatcctttgctcattagttcaca-ttatta--ttg-gtctatttactatatttccagAGGGTCACCTCTCTTCTGGATTGGTGTTGGTGTTGGGCTTTCTGCACTGTTTTCAGTG
    |||||| |    ||||    ||  |  || || |  | ||    ||  |||    ||||||  ||| || | ||   | |  ||  ||||| ||||| || ||||||||||||||||||||||| || || ||  |||| |||   
---gtaattttcctggttttggacaatgtgcttagt-ttgtatgtcgtttgattcttggttattaaattgtgttttttcttttttcttgtagAGGATCACCACTTTTCTGGATTGGTGTTGGTGTTGGTCTATCAGCTTTGTTCTCATAT

upper sequence: GLYMA11G31810.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0041g01360.t01 (Vitis vinifera), 3'ss of exon 2
----------------------------------------------------------------------------gtaataatttactcttttttatttaaatttgttggtatcctttgc--tcattagttcacattattat------tggtctatttactatatttccagAGGGTCACCTCTCTTCTGGATTGGTGTTGGTGTTGGGCTTTCTGCACTGTTTTCAGTG
                                                                             |  |  |||  | | ||||   |  ||||| ||   |  |  ||  |  ||  || | |||  |||      ||  || || | ||| |||| ||||||||||||||||| |||||||| |||||||||||||| || ||||| ||||||  |
gtaattttcctctacacctattctcttttatttcgtttgtgtgaggaaaacttaagatacttttttttcctttccttttttttttttttttctttttccttcatttgatgaccttttaggcacttcttcattgatattgatatgttttgtgaacttttcattatttttctagAGGGTCACCTCTCTTTTGGATTGGAGTTGGTGTTGGGCTCTCGGCACTCTTTTCATGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtatcctttgctcattagttcacattattattggtctatttactatatttccagAGGGTCACCTCTCTTCTGGATTGGTGTTGGTGTTGGGCTTTCTGCACTGTTTTCAGTG
                                              tatttcc  CT-rich tract
                        attattattggtctat  TA-rich tract