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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtagttttcgtctggcttagttgttggtgtttttctgtgttgtgttgtgtttgagtgttttgattttggtggcaaagttgttaatgtgttagtgagtgtagGAGGAAACTTCTATGGTGGTATCGACCGTGCTCTTTGCCTCGGGGGTGACTACTCTCTTGCATATTGCTTTTGGCTCTAGGTTGCCCTTGATTCAGGGCC

Basic information

species Glycine max
transcript GLYMA11G19420.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19420.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 2
gtgagtagttttcgtctggcttagttg-ttggtgtttttctgtgttgtgttgtgtttgagtgttttgattttggtggcaaagttg--ttaat--gtgttagtgagtgtagGAGGAAACTTCTATGGTGGTATCGACCGTGCTCTTTGCCTCGGGGGTGACTACTCTCTTGCATATTGCTTTTGGCTCTAGGTTGCCCTTGATTCAGGGCC
|| |||| || |  | |   |    ||  || |  |  |   | || ||||  | |||| || | | | || |  |      |||   ||||    | ||||| ||||||||||| ||| | |||||||| || || ||||||||||  || || ||||| |||||||||||||   | |||||| | |||||||||||||| ||||| |
gtaagtatttctaatatatttcttctgactgattgtacttcatatt-tgtttagattgaatgctgtaagtt-gtagatttgcttgatctaattgaagatagtgggtgtagGAGGATACTGCGATGGTGGTCTCCACTGTGCTCTTTGTGTCAGGAGTGACAACTCTCTTGCATACATCATTTGGCACGAGGTTGCCCTTGATACAGGGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtttgagtgttttgattttggtggcaaagttgttaatgtgttagtgagtgtagGAGGAAACTTCTATGGTGGTATCGACCGTGCTCTTTGCCTCGGGGGTGACTACTCTCTTGCATATTGCTTTTGGCTCTAGGTTGCCCTTGATTCAGGGCC
                                tgttaat  putative branch site (score: 3)
           ttttgatttt  TA-rich tract