Sequence
atgc intronic sequence ATGC exonic sequencegtgagcagatctcttcttccttttttaaaggtttttttgtgatgcaattagattagtatttagtcactcaagttgctcaagctaataagctctggagcaatatgctgaaattctagtgtgtgctgtgttacttatctcatttttctttttgaattgttagGTTCCATGCCTTAGGGACAATTATGCATATCTTTTACACGATGTGGATACGGGGACAGTTGGTGTTGTTGATCCTTCTGAAGCTGCACCTATCATAGATG
Basic information
species | Glycine max |
transcript | GLYMA11G13470.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G13470.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G06130.2 (Arabidopsis thaliana), 3'ss of exon 2
gtgagcagatctcttcttccttttttaaaggtttttttgtgatgcaattagattagtatttagtcactcaagttgctcaagctaataagctctggagcaatatgctgaaattctagtgtgtgctgtgttacttatctcatttttctttttgaattgttagGTTCCATGCCTTAGGGACAATTATGCATATCTTTTACACGATGTGGATACGGGGACAGTTGGTGTTGTTGATCCTTCTGAAGCTGCACCTATCATAGATG
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-------------------------------------------------ttacttgaacc--gtttcctcagctgcacat-ttatttgtgtcttaaatatcaagtcaacaagcttgttta-gcagtcttgcggataacaattcttctttt-------cagGTGCCATGTCTTACGGACAACTATGCTTATATCTTACATGATGAGGATACCGGTACAGTTGGTGTGGTTGACCCTTCTGAAGCTGTACCTGTTATGGATG
upper sequence: GLYMA11G13470.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G43430.2 (Arabidopsis thaliana), 3'ss of exon 1
gtgagcagatctcttcttccttttttaaaggtttttttgtgatgcaattagattagtat-ttagtcactcaagttgctcaagctaata-agctctggagcaatatgctgaaattctagtgtgtgctgtgttacttatctcatttttctttttgaattgttagGTTCCATGCCTTAGGGACAATTATGCATATCTTTTACACGATGTGGATACGGGGACAGTTGGTGTTGTTGATCCTTCTGAAGCTGCACCTATCATAGATG
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---------------------------------------------------gttagtatgcttttcatcttgaatctactggttgaaacaactctgtaacaatctgctgaagatat-----------tattaacgatct-attttactga--gatgtttcagGTGCCCTGCAGTAAGGACAACTATGCTTATCTGTTGCACGATGAAGACACCGGAACAGTTGGAGTCGTTGATCCTTCTGAGGCTGCACCTGTTATAGAAG
upper sequence: GLYMA11G13470.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0102g01180.t01 (Vitis vinifera), 3'ss of exon 4
gtgagcagatctcttcttccttttttaaaggtttttttgtgatgcaattagattagtatttagtcactcaagttgctcaagctaataagctctggagcaatatgctgaaattctagtgtgtgctgtgttacttatctcattttt--ctttttgaattgttagGTTCCATGCCTTAGGGACAATTATGCATATCTTTTACACGATGTGGATACGGGGACAGTTGGTGTTGTTGATCCTTCTGAAGCTGCACCTATCATAGATG
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----------------------------------------------------------cttaattgactcacttggt-aacttaattgactc--gcttggta-acagttctttttgtgcttcctttcacacataaatctttgtcaactttttccgtcttcagGTACCATGTCTGAAGGACAACTATGCATATCTTTTACATGACGTCGATACAGGCACAGTTGGAGTTGTTGATCCTTCTGAAGCCGTACCTGTTATAGATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9986135|gb|BE660243.1|BE660243EST: ATCAATTTTGCAGTGTAGTGAATCTATCGTCCTCATTGCAGATAGAATTG GTTCCATGCCTTAGGGACAATTATGCATATCTTTTACACGATGTGGATACG
genomic: ATCAATTTTGCAGTGTAGTGAATCTATCGTCCTCATTGCAGATAGAATTGgtgagcagat ... gaattgttagGTTCCATGCCTTAGGGACAATTATGCATATCTTTTACACGATGTGGATACG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaaattctagtgtgtgctgtgttacttatctcatttttctttttgaattgttagGTTCCATGCCTTAGGGACAATTATGCATATCTTTTACACGATGTGGATACGGGGACAGTTGGTGTTGTTGATCCTTCTGAAGCTGCACCTATCATAGATG
cttatctcatttttct CT-rich tract
atttttctttttgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagcagatctcttcttccttttttaaaggtttttttgtgatgcaattagattagtatttagtcactcaagttgctcaagctaataagctctggagcaatatgctgaaattctagtgtgtgctgtgttacttatctcatttttctttttgaattgttagGTTCCATGCCTTAGGGACAATTATGCATATCTTTTACACGATGTGGATACGGGGACAGTTGGTGTTGTTGATCCTTCTGAAGCTGCACCTATCATAGATG
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