Sequence
atgc intronic sequence ATGC exonic sequence...ttatatttttgtttatttgcgctgtaatatattcactatgcgggagtgaaatagtaacctcttaattagagtgtaattaatttctgtaaatgctttccagGAAGAAGGCTGGGTTGTATGTAGAGTGTTCAAAAAACGAATGACAACAGTGAGGAAAATGGGGGAGTATGAGTCACCATGTTGGTATGATGACCCAGCTG
Basic information
species | Glycine max |
transcript | GLYMA11G03340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G03340.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv02s0154g00020.t01 (Vitis vinifera), 3'ss of exon 2
ttatatttttgtttatttgcgctgtaatatattcactatgcgggagtgaaatagtaacctcttaa-ttagagtgt---aattaatttctgtaaatgctttccagGAAGAAGGCTGGGTTGTATGTAGAGTGTTCAAAAAACGAATGACAACAGTGAGGAAAATGGGGGAGTATGAGTCACCATGTTGGTATGATGACCCAGCTG----
|||| | | ||||| | ||| | | | | | | |||| | | || ||| ||| || ||| ||| || ||| | ||||||||||| ||||| || ||||| || ||||| || ||||| ||||| || ||||| |||| || ||| ||||||||||||||||||||||| || |
---ctattttatgtgtttgccttccaat---cttagtgctcacaattcttttagtttgatatgaagttattgtgcctgaagatattactgcaattgcat--caggaagAAGGATGGGTCGTTTGTAGGGTATTCAAGAAGAGAATGGCAACAATGCGGAAAGTGGGTGAACATGGGTCACCATGTTGGTATGATGACCAAGTTTCATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgaaatagtaacctcttaattagagtgtaattaatttctgtaaatgctttccagGAAGAAGGCTGGGTTGTATGTAGAGTGTTCAAAAAACGAATGACAACAGTGAGGAAAATGGGGGAGTATGAGTCACCATGTTGGTATGATGACCCAGCTG
tgctttcc CT-rich tract
ttaattagagtgtaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatatttttgtttatttgcgctgtaatatattcactatgcgggagtgaaatagtaacctcttaattagagtgtaattaatttctgtaaatgctttccagGAAGAAGGCTGGGTTGTATGTAGAGTGTTCAAAAAACGAATGACAACAGTGAGGAAAATGGGGGAGTATGAGTCACCATGTTGGTATGATGACCCAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - -cgctgta
- - - - - - - - - - - - - - - - - actatgc
- - - - - - - - - - - - - - - - - - - - -gggagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgta