1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gagaaactcaggttttgtgttaatggagcccccggcaaaccgtcgtgggggtcttctaagaaagagtatgatatttattatttaaataatctttttctagGTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCCTTTTTGATGAATGGTGAACCAGAGATAGTCAGGAACTTCTTGTTGAAGACACTGCATCTTCAGG
species | Glycine max |
transcript | GLYMA10G35890.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAATTGCAGCTGTTGATCATCAATCAGAGGAAGTTCTAAACTATGATCAG GTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCCTTTTTGATGAATGGTEST: gi|208120473|gb|GD918854.1|GD918854
genomic: CAATTGCAGCTGTTGATCATCAATCAGAGGAAGTTCTAAACTATGATCAGgtgaattcct ... ctttttctagGTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCCTTTTTGATGAATGGT
EST: CAATTGCAGCTGTTGATCATCAATCAGAGGAAGTTCTAAACTATGATCAG GTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCCTTTTTGATGAATGGTEST: gi|208292537|gb|GE091153.1|GE091153
genomic: CAATTGCAGCTGTTGATCATCAATCAGAGGAAGTTCTAAACTATGATCAGgtgaattcct ... ctttttctagGTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCCTTTTTGATGAATGGT
EST: GCAGCTTGTTGATCATCAATCAGAGGAAGTTCTAAACTATGATCTAG GTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCCTTTTTTGATGAATGEST: gi|6502226|gb|AW203599.1|AW203599
genomic: GCAGC-TGTTGATCATCAATCAGAGGAAGTTCTAAACTATGATC-AGgtgaattcct ... ctttttctagGTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCC-TTTTTGATGAATG
EST: CAATTGCAGCTGTTGATCATCAATCAGAGGAAGTTCTAAACTATGATCAG GTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCCTTTTTGATGAATGGTEST: gi|208093387|gb|GD893574.1|GD893574
genomic: CAATTGCAGCTGTTGATCATCAATCAGAGGAAGTTCTAAACTATGATCAGgtgaattcct ... ctttttctagGTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCCTTTTTGATGAATGGT
EST: CAATTGCAGCTGTTGATCATCAATCAGAGGAAGTTCTAAACTATGATCAG GTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCCTTTTTGATGAATGGT
genomic: CAATTGCAGCTGTTGATCATCAATCAGAGGAAGTTCTAAACTATGATCAGgtgaattcct ... ctttttctagGTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCCTTTTTGATGAATGGT
tgggggtcttctaagaaagagtatgatatttattatttaaataatctttttctagGTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCCTTTTTGATGAATGGTGAACCAGAGATAGTCAGGAACTTCTTGTTGAAGACACTGCATCTTCAGG
tctttttct CT-rich tract
taagaaagagtatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaaactcaggttttgtgttaatggagcccccggcaaaccgtcgtgggggtcttctaagaaagagtatgatatttattatttaaataatctttttctagGTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCCTTTTTGATGAATGGTGAACCAGAGATAGTCAGGAACTTCTTGTTGAAGACACTGCATCTTCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA