1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcagatatccaagaaaaactgcagttcagtcttatagtttttgaataataattttagtctaaaatatcaaattattttataactaactgctgctttccagTAGGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTGACGATGGTATTGAAACCGTGTGTCTAAACTTACCAGCAGTAATAAC
species | Glycine max |
transcript | GLYMA10G33110.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG TAGGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTEST: gi|58017045|gb|CX703787.1|CX703787
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tgctttccagTAGGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTT
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG TAGGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTEST: gi|254313595|gb|GR831224.1|GR831224
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tgctttccagTAGGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTT
EST: GATGATAGCAG-ACTCCTCAACTGGGCCTCAAGGCACTTTTGCTTCTAAG T-GGT---CCTTTGACAAAAGAGAAAACAGGTTGCCACAGTTGACAGAGEST: gi|254313596|gb|GR831225.1|GR831225
genomic: GATGATAGCAGGACTCCTCAACTGG-CCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tgctttccagTAGGTGGTCCTT-GACAAA-GAGAAA-CAGGTTGCCACAGTTGACAGAG
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG --G-TGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTEST: gi|58016732|gb|CX703474.1|CX703474
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tgctttccagTAGGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTT
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG TAGGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTEST: gi|22931224|gb|BU548363.1|BU548363
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tgctttccagTAGGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTT
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG TAGGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTEST: gi|23731635|gb|BU763954.1|BU763954
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tgctttccagTAGGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTT
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG --G-TGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTEST: gi|254321572|gb|GR824889.1|GR824889
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tgctttccagTAGGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTT
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG --G-TGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTT
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tgctttccagTAGGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTT
taataattttagtctaaaatatcaaattattttataactaactgctgctttccagTAGGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTGACGATGGTATTGAAACCGTGTGTCTAAACTTACCAGCAGTAATAAC
aactaac putative branch site (score: 1)
ctgctttcc putative PPT
attttagtctaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagatatccaagaaaaactgcagttcagtcttatagtttttgaataataattttagtctaaaatatcaaattattttataactaactgctgctttccagTAGGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTGACGATGGTATTGAAACCGTGTGTCTAAACTTACCAGCAGTAATAAC
- - - - - aagaaaa
- - - - - - - - -actgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taactgc