1 5' 3' | 2 5' 3' | 3 5' 3' |
...gatatccaagaaaaactgcagttcagtcttatagtttttgaataataattttagtctaaaatatcaaattattttataactaactgctgctttccagtagGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTGACGATGGTATTGAAACCGTGTGTCTAAACTTACCAGCAGTAATAAC
species | Glycine max |
transcript | GLYMA10G33110.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGTAGEST: gi|254321572|gb|GR824889.1|GR824889
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCT-A--AGgttagtccat ... tttccagt
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG GTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTGACEST: gi|254313596|gb|GR831225.1|GR831225
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tttccagtagGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTGAC
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG GTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTGACEST: gi|58017045|gb|CX703787.1|CX703787
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tttccagtagGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTGAC
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG TEST: gi|58017045|gb|CX703787.1|CX703787
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tttccagtag-
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG TEST: gi|58017045|gb|CX703787.1|CX703787
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tttccagtag-
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG TEST: gi|23731635|gb|BU763954.1|BU763954
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tttccagtag-
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG GTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTGACEST: gi|58016732|gb|CX703474.1|CX703474
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tttccagtagGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTGAC
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG TEST: gi|58016732|gb|CX703474.1|CX703474
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tttccagtag-
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG TEST: gi|58016732|gb|CX703474.1|CX703474
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tttccagtag-
EST: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAG TEST: gi|254313595|gb|GR831224.1|GR831224
genomic: AGATGATAGCAGGACTCCTCAACTGGCCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tttccagtag-
EST: GATGATAGCAG-ACTCCTCAACTGGGCCTCAAGGCACTTTTGCTTCTAAG -TGGTCCTTTGACAAAAGAGAAAACAGGTTGCCACAGTTGACAGAG
genomic: GATGATAGCAGGACTCCTCAACTGG-CCTCAAGGCACTTTTGCTTCTAAGgttagtccat ... tttccagtagGTGGTCCTT-GACAAA-GAGAAA-CAGGTTGCCACAGTTGACAGAG
taattttagtctaaaatatcaaattattttataactaactgctgctttccagtagGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTGACGATGGTATTGAAACCGTGTGTCTAAACTTACCAGCAGTAATAAC
aactaac putative branch site (score: 1)
ctgctttcc putative PPT
ttagtctaaaatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatatccaagaaaaactgcagttcagtcttatagtttttgaataataattttagtctaaaatatcaaattattttataactaactgctgctttccagtagGTGGTCCTTGACAAAGAGAAACAGGTTGCCACAGTTGACAGAGAGGTTGACGATGGTATTGAAACCGTGTGTCTAAACTTACCAGCAGTAATAAC
- - - -aagaaaa
- - - - - - - actgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctgc