Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacccctccaccacccaatttcttacctttgatcacatttaagcatacccatttgcatgttttcttagaagtagttgttttttgttgttgatgataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGGCTTTCCCTTACCGACATCAAGATTGACATCAAGAGGGTCCCTAAGAAGA

Basic information

species Glycine max
transcript GLYMA10G32580.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32580.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os02g40880.1 (Oryza sativa), 3'ss of exon 2
gtaacccctccaccacccaatttcttacctttgatcacatttaagcatacccatttgcatgttttcttagaagtagttgttttttgttgttgatgataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGGCTTTCCCTTACCGACATCAAGATTGACATCAAGAGGGTCCCTAAGAAGA
    |   |     | |     || |   | | |||  | ||||  |||      ||| |   || || ||  |        | |||| |   ||| |  |  |||||||||| ||||| ||||| ||||| |||| |||  |||| ||||| ||||||||||| || ||||||||||||||||||||  | ||||| |||||||
----ctattatgttatcgctgctcatttttctaatcggagttaattatattgtagtgctttgattattggatatcacataactctgttttctgtga-atcaccagGCACTTGTGGATGCTCCTGACATGGTCAGGTGCCAGATCAACTTCAAGAGGCTTTCCCTGACTGACATCAAGATTGACATCAAACGTGTCCCGAAGAAGA

upper sequence: GLYMA10G32580.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os04g43540.1 (Oryza sativa), 3'ss of exon 2
gtaacccctccaccacccaatttcttacctttgatcacatttaagcatacccatttgcatgttttcttagaagtagttgttttttgttgttgatgataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGGCTTTCCCTTACCGACATCAAGATTGACATCAAGAGGGTCCCTAAGAAGA
 || |   | |  |||   || |||   ||| | |||  | |||   ||    |||   | ||    |   |   | | | |    ||| |  |  | ||   |||||||||| |||||||||||||||||  | | |||  | || |||||  ||||||| || || ||||| ||||||||||||||| | |||||||||||||
-tagctgtttc--cacttcatctctagactt-gctcat-tataaatttattactttatgttttgagattttaagtgctatatgcctttgctttttgtgatttcagGCACTTGTGGATGCCCCTGATATGGTCCGCTGCCAGATAAACTTCAAGCGGCTTTCTCTGACTGACATTAAGATTGACATCAAGCGTGTCCCTAAGAAGA

upper sequence: GLYMA10G32580.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G140116_T01 (Zea mays), 3'ss of exon 2
gtaacccctccaccacccaatttct---tacctttgatca--catttaagcatacccatttg--catgttttcttagaagtagttgtt-ttttgttgttgatgataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGGCTTTCCCTTACCGACATCAAGATTGACATCAAGAGGGTCCCTAAGAAGA
        || | || || || |||   |  | ||||| |    | |     ||     ||   || |  |||    |||   |  |    ||||||       | | |  |||||||||| ||||||||||||||||| |||| ||| || || |||||  |||| || ||||| ||||||||||||||||||||  | ||||| |||||||
--------tctagcaacctatctctgcgttgccttgattatttgtcttgctgtaattgattaatcaagcattc----aagccctcatcgccttgttgcattctgtga-accagGCACTTGTGGATGCCCCTGATATGGTCAGGTGCCAGGTGAACTTCAAGCGGCTCTCACTTACTGACATCAAGATTGACATCAAACGTGTCCCCAAGAAGA

upper sequence: GLYMA10G32580.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G168330_T02 (Zea mays), 3'ss of exon 2
gtaacccctccaccacccaatttcttacctttgatcacatttaagcatacccatttgcatgttt--tcttagaagtagttgtt-ttttgttgttgatgataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGGCTTTCCCTTACCGACATCAAGATTGACATCAAGAGGGTCCCTAAGAAGA
        | |   |   ||     ||  ||||   |        |  |   |||    || ||   | |  ||| | |  |    ||| ||      ||   |  |||||||||| || |||||||||||||| |||| |||  | || |||||| |||| || ||||| ||||||||||||||||||||  | || || |||||| 
-------gttcgatatttaacaatatatatttgtggagccggtgcctcagtaattgatttggttaggcattcaagcactcatggccttgatgcattctatgg-accagGCACTTGTGGACGCCCCTGATATGGTCAGGTGCCAGATTAACTTCAAACGGCTCTCACTTACTGACATCAAGATTGACATCAAACGCGTTCCCAAGAAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5770790|gb|AI973964.1|AI973964
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|208045835|gb|GD845129.1|GD845129
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|31467262|gb|CD409290.1|CD409290
EST:     CGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: CGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|208041680|gb|GD843074.1|GD843074
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAA
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAA
EST: gi|298163335|gb|HO012068.1|HO012068
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|254321857|gb|GR837271.1|GR837271
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|192328761|gb|FK022547.1|FK022547
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|193551720|gb|FK506881.1|FK506881
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|7042248|gb|AW472142.1|AW472142
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|214009297|gb|DB989929.1|DB989929
EST:     GTCATTGACCAGAACAGA                         GCATAAAAT-GATGCCCCTGATATGATGAAGTCCCAAGTCAATTTCAAAAG
genomic: GTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCA-CTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAG
EST: gi|4291136|gb|AI441718.1|AI441718
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|15813159|gb|BI785434.1|BI785434
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|15815103|gb|BI787378.1|BI787378
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|12690000|gb|BG156336.1|BG156336
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|16348253|gb|BI973848.1|BI973848
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|18729999|gb|BM525622.1|BM525622
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|193512002|gb|FK471454.1|FK471454
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|193633408|gb|FK584632.1|FK584632
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|14991095|gb|BI316768.1|BI316768
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|7234584|gb|AW569920.1|AW569920
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|18039321|gb|BM307615.1|BM307615
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|24136942|gb|BU927452.1|BU927452
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|7234508|gb|AW569845.1|AW569845
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|7693023|gb|AW761122.1|AW761122
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|5126838|gb|AI748574.1|AI748574
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|254321858|gb|GR837272.1|GR837272
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|15000999|gb|BI321813.1|BI321813
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|151397578|gb|EV267451.1|EV267451
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCTTTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|21993694|gb|BQ785222.1|BQ785222
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|31306167|gb|CD391370.1|CD391370
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|192303868|gb|FG998220.1|FG998220
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|298174801|gb|HO017910.1|HO017910
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|7925814|gb|AW831840.1|AW831840
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGNTGAGGTCCCAAGTCAATTTCAAAAG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGG-TGAGGTCCCAAGTCAATTTCAAAAG
EST: gi|4306863|gb|AI443965.1|AI443965
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|298193712|gb|HO040360.1|HO040360
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|193638414|gb|FK586754.1|FK586754
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|13787362|gb|BG649954.1|BG649954
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|14012015|gb|BG726937.1|BG726937
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|17021963|gb|BM092997.1|BM092997
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|24136770|gb|BU927280.1|BU927280
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|298178616|gb|HO024351.1|HO024351
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|21601022|gb|BQ611353.1|BQ611353
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|17022676|gb|BM093710.1|BM093710
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|16519551|gb|BI347336.1|BI347336
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|7146345|gb|AW508267.1|AW508267
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|57575581|gb|CX548556.1|CX548556
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|7640454|gb|AW734756.1|AW734756
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|192304202|gb|FG993514.1|FG993514
EST:     TCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: TCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|31467263|gb|CD409291.1|CD409291
EST:     CGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: CGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|213589002|gb|DB973102.1|DB973102
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|298189077|gb|HO037480.1|HO037480
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|8827789|gb|BE211519.1|BE211519
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|213592943|gb|DB969853.1|DB969853
EST:     AGGAAAATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|7685277|gb|AW755925.1|AW755925
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|26268881|gb|CA819944.1|CA819944
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|193353600|gb|FK322392.1|FK322392
EST:     ACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: ACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|120531931|gb|EH260064.1|EH260064
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|9564031|gb|BE473540.1|BE473540
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|192304201|gb|FG993513.1|FG993513
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|31457840|gb|CD399868.1|CD399868
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTNGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|11688785|gb|BF596461.1|BF596461
EST:     GGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: GGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|193671891|gb|FK614593.1|FK614593
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|151401993|gb|EV271806.1|EV271806
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|5677541|gb|AI938671.1|AI938671
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|5058153|gb|AI736629.1|AI736629
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|192329252|gb|FK020171.1|FK020171
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|151397093|gb|EV266966.1|EV266966
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|151402189|gb|EV272002.1|EV272002
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|192303869|gb|FG998221.1|FG998221
EST:     CATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: CATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|209705890|gb|BW675995.1|BW675995
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|19452511|gb|BM953921.1|BM953921
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|18039520|gb|BM307814.1|BM307814
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|254318352|gb|GR832520.1|GR832520
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|18735313|gb|BM528692.1|BM528692
EST:     TCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: TCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
EST: gi|31463320|gb|CD405348.1|CD405348
EST:     AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGA                         GCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG
genomic: AGGAATATGGCAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAgtaacccctc ... ataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatttgcatgttttcttagaagtagttgttttttgttgttgatgataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGGCTTTCCCTTACCGACATCAAGATTGACATCAAGAGGGTCCCTAAGAAGA
                                     tgttgat  putative branch site (score: 4)
                                       ttgatgataataata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaacccctccaccacccaatttcttacctttgatcacatttaagcatacccatttgcatgttttcttagaagtagttgttttttgttgttgatgataataatagGCACTTGTCGATGCCCCTGATATGGTGAGGTCCCAAGTCAATTTCAAAAGGCTTTCCCTTACCGACATCAAGATTGACATCAAGAGGGTCCCTAAGAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG