1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatgtcacatgctactaggttttaaaattttggtaatgcatgctactatgaatatttatattattgtttttaaaatatcttctcttttctttacagTATGATCAGTCTGTACAATCTTTTGGAGACTCCATACTGCCAGTTTTATGTCTACATGAAGTTACTGAATTTAGCTGTTGATGGGAAAGTCACAGAACAC
species | Glycine max |
transcript | GLYMA10G28080.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAAAAATACTTCAGCAGCCAAACGAAAAGCCTGCCGTGCGATTGAAGAT TATGATCAGTCTGTACAATCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|19270523|gb|BM886779.1|BM886779
genomic: GCAAAAATACTTCAGCAGCCAAACGAAAAGCCTGCCGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGTCTGTACAATCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: GTGCGATTGAAGAT TATGATCAGTCTGTACAATCTTTTGGAGACTCCATACTGCCAGTTTTATGTEST: gi|15203368|gb|BI426136.1|BI426136
genomic: GTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGTCTGTACAATCTTTTGGAGACTCCATACTGCCAGTTTTATGT
EST: GCAAAAATACTTCAGCAGCCAAACGAAAAGCCTGCCGTGCGATTGAAGAT TATGATCAGTCTGTACAATCTTTTGGAGACTCCATACTGCCAGTTTTATGT
genomic: GCAAAAATACTTCAGCAGCCAAACGAAAAGCCTGCCGTGCGATTGAAGATgtaatgtcac ... ttctttacagTATGATCAGTCTGTACAATCTTTTGGAGACTCCATACTGCCAGTTTTATGT
gctactatgaatatttatattattgtttttaaaatatcttctcttttctttacagTATGATCAGTCTGTACAATCTTTTGGAGACTCCATACTGCCAGTTTTATGTCTACATGAAGTTACTGAATTTAGCTGTTGATGGGAAAGTCACAGAACAC
tatcttctcttttctt CT-rich tract
aatatttatattattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtcacatgctactaggttttaaaattttggtaatgcatgctactatgaatatttatattattgtttttaaaatatcttctcttttctttacagTATGATCAGTCTGTACAATCTTTTGGAGACTCCATACTGCCAGTTTTATGTCTACATGAAGTTACTGAATTTAGCTGTTGATGGGAAAGTCACAGAACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT