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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aactaaattaatcacatacaccatgggaaagagaaaattattaaagattttgcacataacatttttatatgatatagtttgtgatctttatccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC

Basic information

species Glycine max
transcript GLYMA09G08150.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G08150.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0016g00900.t01 (Vitis vinifera), 3'ss of exon 3
aactaaattaatcacatacaccatgggaaagagaaaattattaaagattttgcacataacatttttatatga-tatagtttgtgatctttatcca--ttacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC
   || |  || | || | |   |   | |   |   ||      | ||       |  |||||| | || | |  | ||| |  | |||||     || ||||||||| |||||||||||||||||  ||||||| ||||  ||||| | |||||||| || ||||| || ||||
--atacaaaaacctca-ataatctttcagatgaatttttggccttgtttacctttctcccattttcaaataactccattttttattttttatttgctttgcagGAAATTGTTGATATGTGTGATTATGCTGTTGGGTTAAGTCGACAAATAAATGGATCCATCATACCTTCTGAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258546|gb|BG881454.1|BG881454
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|208083788|gb|GD881736.1|GD881736
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|208034630|gb|GD836794.1|GD836794
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATGTGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|193521194|gb|FK480305.1|FK480305
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|208076069|gb|GD875124.1|GD875124
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|254341577|gb|GR852714.1|GR852714
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|16347961|gb|BI973556.1|BI973556
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAA                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|6668020|gb|AW279471.1|AW279471
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
EST: gi|27427065|gb|CA938585.1|CA938585
EST:     TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAG                         GAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT
genomic: TGTCTCTTGAGATGGGAAAAATTCTCCCAGAAGGAATTGGGGAAGTTCAGgtatcgcaat ... tccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattttgcacataacatttttatatgatatagtttgtgatctttatccattacagGAAATTATTGATATGTGTGATTATTGTGTTGGGCTAAGCAGACAATTGAATGGATCAATTATACCATCAGAAC
        acataac  putative branch site (score: 3)
                                       tctttatcc  putative PPT
        acataacatttttata  TA-rich tract