1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gatcaaacattcaacccaccttatatctccctggtaacctagtactgaatctacgtgctattggaaactaattgaggatgtgcttgtaatgttgttgcagATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGAGGGCCAAATTGGATCCTTTGGGTAGGCTGGTGTCTCTTGAGATGGGAA
species | Glycine max |
transcript | GLYMA09G08150.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGGCT ATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|208076069|gb|GD875124.1|GD875124
genomic: TTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACTgtgagttctt ... gttgttgcagATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: TTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACT ATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|151397251|gb|EV267124.1|EV267124
genomic: TTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACTgtgagttctt ... gttgttgcagATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: TTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACT ATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|151408630|gb|EV278438.1|EV278438
genomic: TTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACTgtgagttctt ... gttgttgcagATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: TTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACT ATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|6668020|gb|AW279471.1|AW279471
genomic: TTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACTgtgagttctt ... gttgttgcagATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: TTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACT ATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|16347961|gb|BI973556.1|BI973556
genomic: TTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACTgtgagttctt ... gttgttgcagATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: TTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACT ATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGEST: gi|254331835|gb|GR846145.1|GR846145
genomic: TTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACTgtgagttctt ... gttgttgcagATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
EST: TTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACT ATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
genomic: TTGAGGAGGGGTTGCGAGCTTGCAGTGAAGCAGCTAAGACATGGATGACTgtgagttctt ... gttgttgcagATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTG
tgaatctacgtgctattggaaactaattgaggatgtgcttgtaatgttgttgcagATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGAGGGCCAAATTGGATCCTTTGGGTAGGCTGGTGTCTCTTGAGATGGGAA
aactaat putative branch site (score: 2)
aaactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcaaacattcaacccaccttatatctccctggtaacctagtactgaatctacgtgctattggaaactaattgaggatgtgcttgtaatgttgttgcagATACCGGCACCGAAGAGAGGTGAGATTGTGAGACAGATTGGTGAAGCATTGAGGGCCAAATTGGATCCTTTGGGTAGGCTGGTGTCTCTTGAGATGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- -caaacat
- - - - - - - -ccacctt
- - - - - - - - - - - - -tctccct
- - - - - - - - - - - - - - - - - - - - - - - - - -tacgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgt