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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcccctcttccctctatttttcatgtctatcctgcaaaatttggatttccaacttgtatgcatgcatttatctgtgtgcagctgttttaacttttttgtcatcggtgtgcatttatgttttgcagTATGGTTGGTTGATCAAGTATGGCTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCTCTCTTCATGTGCTG

Basic information

species Glycine max
transcript GLYMA09G07520.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G07520.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------------------------gtttgcccctcttccctc-tatttttcatgtctatcct-gcaaaatttggatttccaacttgtatgcatgcat-ttatctgtgtgcagctgttttaacttttttgtcatcgg-----tgtgcatttatgtt-ttgcagTATGGTTGGTTGATCAAGTATGGCTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCTCTCTTCATGTGCTG
                                             |||       ||    | | | |||| ||| | |  | ||  | | |  | || ||  ||  ||     ||  | || | |    |    |||| |   |   |  || ||     | |   |   |||| ||||||||||||||||| |||| |  ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
gtttgtcaccctccatctaatacgatcaatccagttggatggtgatttctataatttaatgcatgtatttcttgttttttatagctgactcttaaatttcattttaaatcttgacacatcatttcttaaaaataattttgagcctacagctataggcagcttatctctcattgttgttgcagTATGGTTGGTTAATCAGGGCTGGTTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCACTCTTTATGTGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120493969|gb|EH222136.1|EH222136
EST:     CCGTGAACAGCAGACTTATCATTGAGAATTTAATGAAG                         TATGGTTGGTTGATCAAGTATGGCTTTTGGTTTAGTTCAAAATCATTGAGA
genomic: CCGTGAACAGCAGACTTATCATTGAGAATTTAATGAAGgtttgcccct ... tgttttgcagTATGGTTGGTTGATCAAGTATGGCTTTTGGTTTAGTTCAAAATCATTGAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtgtgcagctgttttaacttttttgtcatcggtgtgcatttatgttttgcagTATGGTTGGTTGATCAAGTATGGCTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCTCTCTTCATGTGCTG
              ttttaac  putative branch site (score: 2)
            tgttttaactttttt  TA-rich tract