1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agaaaactgttacataaattgttttggtagtcaccatttcttgctggcctcatatcatgagagaaattacttcttaatgatgggttcttttgcttttcagATGAAACTTTATGATCTTCGTCTACTTCAGAGGGGTGCTGTTCAATGTTATGAAGGGCATGTGAATTCTCATACTCGTATACAGATGGGCGTTGATCCAT
species | Glycine max |
transcript | GLYMA09G05360.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
ggcctcatatcatgagagaaattacttcttaatgatgggttcttttgcttttcagATGAAACTTTATGATCTTCGTCTACTTCAGAGGGGTGCTGTTCAATGTTATGAAGGGCATGTGAATTCTCATACTCGTATACAGATGGGCGTTGATCCAT
tcttaat putative branch site (score: 3)
ttcttttgcttttc putative PPT
aaattacttcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaaactgttacataaattgttttggtagtcaccatttcttgctggcctcatatcatgagagaaattacttcttaatgatgggttcttttgcttttcagATGAAACTTTATGATCTTCGTCTACTTCAGAGGGGTGCTGTTCAATGTTATGAAGGGCATGTGAATTCTCATACTCGTATACAGATGGGCGTTGATCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - ctgttac
- - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - tcaccat
- - - - - - - - - - - - - - - - - - - - -tgctggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatggg