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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaatgaagagtgatgcatgatttgtgtttatttactttggctgattgtttatgatctgaattgggatttgtctacttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAATATCCGTAATATGTCTGTCATTGCTCATGTTGATCACG

Basic information

species Glycine max
transcript GLYMA08G18110.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18110.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv19s0027g00760.t01 (Vitis vinifera), 3'ss of exon 1
-gtaagtcaatgaagag--tgatgcatgatttgtgtttatttactttggctgattgtttat----gatctgaattggga---tttgtc-tacttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAATATCCGTAATATGTCTGTCATTGCTCATGTTGATCACG
 ||||||  ||        | ||     |||  ||     ||    ||    ||  | |||    |||||  |||| ||   |||  |    |||||||||| ||||| |||| ||| ||||| ||| | ||||||||||| |||||||| || |||||||||||||| ||||||||||||||||| |
ggtaagtggattgcattcttaatttgatattcctggcatgttgacctgatatatcctctattcttgatctttattgagaatatttaccacgtttctgcagGTCAAGTTTACAGTTGAGGAGCTTCGTAGGATTATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTTGATCATG

upper sequence: GLYMA08G18110.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S431_2V6.1 (Physcomitrella patens), 3'ss of exon 1
-------gtaagtcaat-gaagagtgatgcatgatttgtgtttatttactttggctga--ttgtttatgatctga-attg--ggatttgtctacttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAATATCCGTAATATGTCTGTCATTGCTCATGTTGATCACG
        || |||| | | |   || | |  || |  | ||| |  | || || |||  |||  | |   || |   ||  |    ||| | || ||||||||||||||  ||||||| ||||| |||  |||||||||| | ||||| ||||| ||||| |||||||||||||| || ||||| ||||
gcgaacactacgtcattcggaccttggttccggaatcatattt-tcgaattcggttgaaattgagtgtccgcttatgctgtcgagagtgtgtgct-ctgcagGTGAAGTTTTCAGCTGAGGAGCTCCGTGCTATTATGGACAAGAAGCACAATATTCGTAACATGTCTGTCATTGCCCACGTTGACCACG

upper sequence: GLYMA08G18110.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ28367 (Selaginella moellendorffii), 3'ss of exon 1
gtaagtcaatgaagagtgatgcatgatttgtgtttatttactttggctgattgtttatgatctgaattgggatttgtctact-tctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAATATCCGTAATATGTCTGTCATTGCTCATGTTGATCACG
                             |||  |  || || |||   |||  |   |   |    ||  ||     | || | | |||||||| ||||| || |||||||| || || || |||||| | ||||| || ||||| || |||||||| ||||||||||| |||||||
-----------------------------gtgagtgattcctctgg--aattcgtagcggatt---ctgacatcgtgatgctctttccagGTGAAATTCACGGCAGAAGAGCTGCGCCGGATCATGGACAAGAAGCACAACATCCGGAACATGTCTGTGATTGCTCATGTCGATCACG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6667322|gb|AW278773.1|AW278773
EST:     TTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|209716827|gb|BW654346.1|BW654346
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|33390610|gb|CA853805.1|CA853805
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|7684880|gb|AW755528.1|AW755528
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|120529990|gb|EH258124.1|EH258124
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAG-TCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|18040122|gb|BM308416.1|BM308416
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|209709643|gb|BW661970.1|BW661970
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|213606494|gb|DB971118.1|DB971118
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|254325442|gb|GR838323.1|GR838323
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|5605835|gb|AI899933.1|AI899933
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|14259251|gb|BG882159.1|BG882159
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|213615259|gb|DB963453.1|DB963453
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|209701834|gb|BW661327.1|BW661327
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|209705768|gb|BW661436.1|BW661436
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|213607326|gb|DB967063.1|DB967063
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|254342547|gb|GR858709.1|GR858709
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|209724199|gb|BW658105.1|BW658105
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|209727731|gb|BW658470.1|BW658470
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|254342212|gb|GR853349.1|GR853349
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|209725229|gb|BW672704.1|BW672704
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|22931766|gb|BU548905.1|BU548905
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|6454158|gb|AW184906.1|AW184906
EST:     CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: CTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|213592581|gb|DB961841.1|DB961841
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
EST: gi|213599515|gb|DB968340.1|DB968340
EST:     TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATG                         GTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT
genomic: TTCAGCTTTGACTTTTGTTGGAAACTAAGGCCTAATCAAAATGgtaagtcaat ... acttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttactttggctgattgtttatgatctgaattgggatttgtctacttctgcagGTGAAGTTCACAGCTGAAGAGCTACGTCGTATTATGGACTATAAGCATAATATCCGTAATATGTCTGTCATTGCTCATGTTGATCACG
          ggctgat  putative branch site (score: 4)
                                          tctacttct  putative PPT
               attgtttat  TA-rich tract