1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgtatcattctaatatttttttctaattatttttttaatctatttgtatttgtttcatgattgacgtttttttggtgcaaagttgatgctcgttctggttttgcagTTCGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG
species | Glycine max |
transcript | GLYMA08G09640.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG TTCGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGEST: gi|208092250|gb|GD888909.1|GD888909
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTCGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
EST: GGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCAATTAGTGAATGGGG TTCGGTGTTTTGTTTTTGTCTTCCGTCGGEST: gi|192314057|gb|FK008797.1|FK008797
genomic: GGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCA-TT-GTGAATGGGGgtttgtatca ... ggttttgcagTTCGGTGTTTTGTTTTTGTCTTCCGTCGG
EST: TTGGACCACACAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGG TTCGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
genomic: TTGGACCACGCAGAAGGTCTTTCACTTTCTCAATTTCATTGTGAATGGGGgtttgtatca ... ggttttgcagTTCGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAG
gtttcatgattgacgtttttttggtgcaaagttgatgctcgttctggttttgcagTTCGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG
ttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtatcattctaatatttttttctaattatttttttaatctatttgtatttgtttcatgattgacgtttttttggtgcaaagttgatgctcgttctggttttgcagTTCGGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT