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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttagagaaaaatgatattagcttaatgaaaggaaaatttgtgatggtgtagtagttgtcttatgaactcatgtattgatgtggattgccaactaatcagGCTAGCTGCATTAAGCTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAG

Basic information

species Glycine max
transcript GLYMA08G09370.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G09370.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv05s0020g01880.t01 (Vitis vinifera), 3'ss of exon 3
gttagagaaaaatgatattagcttaatgaaaggaaaatttgtgatggtgtagtagtt-gtcttatgaactcatg-tattgatgtggattgccaactaat---cagGCTAGCTGCATTAAGCTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAG
           ||    || |   |   ||    ||| |   || |    |||| || | ||| |||||| |   ||||| | |  || |  ||   ||   |||| | ||||||| || ||||| |||||||||||||||| |||| ||||| ||   ||| |||| |||||| ||||| |||||| |||||||||||
-----ttgtggatccggttggtcaatctaataacaaaatgaagaggcaaaagtaatttgccttttgaacttacactattggttttcatcgtgaaactatgagcagGTTGGCTGCATCAAACTGGAGTGGTGAAGGTTCTTTCCTATTCACATCTAGTTCTGCACCATTTGATTGCAATGACAATGGATCATGTGATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6719063|gb|AW306710.1|AW306710
EST:     ATTTATTGTGCTCCACCTTCTCGTACCCCAGACTATGCTGGCAATGTCAG                         GCTAGCTGCATTAAGCTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAG
genomic: ATTTATTGTGCTCCACCTTCTCGTACCCCAGACTATGCTGGCAATGTCAGgtgagaattc ... aactaatcagGCTAGCTGCATTAAGCTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgtagtagttgtcttatgaactcatgtattgatgtggattgccaactaatcagGCTAGCTGCATTAAGCTGGAATGGTGAAGGTTCTTTCTTATTTACATCAAGCAGTGCTCCATATGATTGTAATGATAATGGACCATGTGATGAG
                            tattgat  putative branch site (score: 3)
               ttatgaa  TA-rich tract