1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aattatgttgcttgcttcatttagtctgtacattgttgtcctaatgttatttatctcttaatcatttcctcattatcgttggtgtatgtgtggagcacagGTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTACCTTGACTTAGATCTAAAGAAGCACATGGATTCATCTCCAGAATTTGCA
species | Glycine max |
transcript | GLYMA08G08330.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTCGCAAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAG GTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTAEST: gi|208177598|gb|GD976991.1|GD976991
genomic: ATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAGgtatattata ... tggagcacagGTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTA
EST: ATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAG GTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGTAGTEST: gi|298193354|gb|HO033788.1|HO033788
genomic: ATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAGgtatattata ... tggagcacagGTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTG-AGT
EST: ATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAG GTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTAEST: gi|120531893|gb|EH260026.1|EH260026
genomic: ATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAGgtatattata ... tggagcacagGTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTA
EST: ATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAG GTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTAEST: gi|120531742|gb|EH259875.1|EH259875
genomic: ATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAGgtatattata ... tggagcacagGTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTA
EST: ATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAG GTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTAEST: gi|18038935|gb|BM307229.1|BM307229
genomic: ATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAGgtatattata ... tggagcacagGTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTA
EST: ATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAG GTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTAEST: gi|7684881|gb|AW755529.1|AW755529
genomic: ATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAGgtatattata ... tggagcacagGTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTA
EST: ATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAG GTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTAEST: gi|298198440|gb|HO039979.1|HO039979
genomic: ATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAGgtatattata ... tggagcacagGTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTA
EST: ATTCGCGAGATTTCTCTCTTGAAAGAAAAGCAGCACAGGAACATTGTTAG GTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTA
genomic: ATTCGCGAGATTTCTCTCTTGAAAGAAATGCAGCACAGGAACATTGTTAGgtatattata ... tggagcacagGTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTA
gttatttatctcttaatcatttcctcattatcgttggtgtatgtgtggagcacagGTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTACCTTGACTTAGATCTAAAGAAGCACATGGATTCATCTCCAGAATTTGCA
tcttaat putative branch site (score: 3)
ttaatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattatgttgcttgcttcatttagtctgtacattgttgtcctaatgttatttatctcttaatcatttcctcattatcgttggtgtatgtgtggagcacagGTTGCAGGATGTAGTACATGATGAGAAGAGTTTGTATCTGGTTTTTGAGTACCTTGACTTAGATCTAAAGAAGCACATGGATTCATCTCCAGAATTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - -gcttgct
- - - - - - - - - - - - tctgtac
- - - - - - - - - - - - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttggtg