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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtcgccttactactgtttcccttcccccaaacactgccttttgatttttgttcctaatttacctttaattaattagGCCAAAACCACCAAGAAAATTGTGTTGAGGCTCCAGTGTCAGGGATGCAAGCATGTCTCGCAGCACGCTATCAAG

Basic information

species Glycine max
transcript GLYMA08G08030.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G08030.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 2
------------------gtacgtcgccttactactgtttcccttcccccaaacactgccttttgatttttgttc--ctaatttacctttaattaattagGCCAAAACCACCAAGAAAATTGTGTTGAGGCTCCAGTGTCAGGGATGCAAGCATGTCTCGCAGCACGCTATCAAG
                      || | |||   |   |  |  |    ||||     ||   ||  |  | | |   | | ||  | | |   | |  |||| || ||||||||||| |||||  ||||||||||||| ||||| ||||| || || || |||||| | ||||||
ggttaactgtatccttagaattgttggcttctcaaattaactatcaagccaattgaggctaattcttcatagattgaccatttcccttgtgccttaacagGCTAAGACCACCAAGAAGATTGTTCTGAGGCTCCAGTGCCAGGGTTGCAAACACGTATCCCAGCACCCAATCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4287987|gb|AI441268.1|AI441268
EST:     GCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAG                         GCCAAAACCACCAAGAAAATTGTGTTGAGGCTCCAGTGTCAGGGATGCAAG
genomic: GCAAACAGTCCGGTTACGGTGGCCAGACTAAGCCTGTTTTCCACAAAAAGgtacgtcgcc ... aattaattagGCCAAAACCACCAAGAAAATTGTGTTGAGGCTCCAGTGTCAGGGATGCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccccaaacactgccttttgatttttgttcctaatttacctttaattaattagGCCAAAACCACCAAGAAAATTGTGTTGAGGCTCCAGTGTCAGGGATGCAAGCATGTCTCGCAGCACGCTATCAAG
                                 taatttacctttaatt  TA-rich tract