Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtggtttggcgatggatgaattcaatttaagccattgtgctctctttttgcctgcaccttttcactttctcgtgtttccctttttccttctgccagGGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAATCACAATTGAACGCGCAAGCCATGTTCAATCTTGGATACATGCATGAGC

Basic information

species Glycine max
transcript GLYMA08G05930.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05930.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os03g15350.1 (Oryza sativa), 3'ss of exon 4
gtatgtggtttggcgatggatgaattcaatttaagccattgtgctctctttttgcctgcacctttt--cactttctcgtgtttccctttttccttctgccagGGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAATCACAATTGAACGCGCAAGCCATGTTCAATCTTGGATACATGCATGAGC
  |  || ||  ||  |   |  || |  |    |||  || | |||      | |      |  |  || | | |  ||  |   |  ||   | |  ||||||  || ||||||||| ||||| || || ||||| |||||||||||  |||||||||  || || || |||||||| || ||||| || ||||||||||
aaaattgcttatgcacttcttatatac--tgggggcctctgcgttcttaaagagaccattattgctgacattgtgtattggatgtgtacttttgtattacagGGTGTTGGCAGGGATTACGAGCGTGCAGCCGAGGCATATATGCATGCGCAATCACAATCTAATGCTCAGGCCATGTTTAACCTTGGTTATATGCATGAGC

upper sequence: GLYMA08G05930.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G18260.1 (Arabidopsis thaliana), 3'ss of exon 4
---------------------------------------------gtatgtggtttggcgatggatgaattcaatttaagccattgtgctctctttttgcctgcaccttttcactttctcgtgtttccctttttccttctgccagGGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAATCACAATTGAACGCGCAAGCCATGTTCAATCTTGGATACATGCATGAGC
                                              |  |   | |  | |||  |||||| |  |  |   |   || |  ||| | |||||   || |    | ||||||      ||||   ||      |||| ||||  || |||| || ||| || || || || || ||||||||||||||||| |  || |||||||| |||||||| || || ||||||||||| |
gtgagtttacctcgtataagaaactagattatgaacctaataacgttgagacatgtaacaatgattgaatt-agctagaaaaaacttgata-cttgtcgcctgattctctctcttctctcgt-----tctttgatctctaaatagGGAACTGAGAGAGATTTTGTGCGTGCGGCAGAAGCATACATGCATGCTAAATCACAGTCCAATGCGCAAGCAATGTTCAACCTCGGTTACATGCATGAAC

upper sequence: GLYMA08G05930.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G73570.1 (Arabidopsis thaliana), 3'ss of exon 5
----------------------------------------------------------------gtatgtggt----ttggcgatggatgaattcaatttaagccattgtgctctctttttgcctgcaccttttcactttctcgtgtttccctttttccttctgccagGGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAATCACAATTGAACGCGCAAGCCATGTTCAATCTTGGATACATGCATGAGC
                                                                 ||| |  |    ||  |  | |||   | |||   ||   |||   |  || |     ||  || ||  |   ||||  ||   | | |  || |  |  |||||||| |  |||||||  | ||| || || ||||| || ||| |||||||||| ||||  || |||||||| |||||||| || || |||||||||||||
gtaagtctacttacgcttgaagtttatgaattgtgaacatacggacaatggatataattgtcacttatctcatcccattcacatttgatttttccaagagaacatatttctcattcatgaaatctagacgttaactgattct-atgaggctcatactcatgttcacagGGTACAGAGAGGGATTTCGTGCGTGCAGCAGAGGCGTACATGTATGCTAAATCTCAATCAAATGCGCAAGCAATGTTCAACCTCGGTTACATGCATGAGC

upper sequence: GLYMA08G05930.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv17s0000g02280.t01 (Vitis vinifera), 3'ss of exon 4
----------------------------------------gtatgtggtttggcgatggatgaattcaatttaagccattgtgctctctttttgcctgcaccttttcactttctcgtgtttccctt-tttccttctgccagGGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAATCACAATTGAACGCGCAAGCCATGTTCAATCTTGGATACATGCATGAGC
                                        ||    |  ||   |||    | || || ||     |    | |  | |   |      |  ||||   | | |  ||||| |||| ||||| | |  ||||||||||  || |||||||| ||||||||  |||| || |||||||| || || ||||  || || |||||||||||||| ||||| |||||||||||||
gtatgtgtctataaatgggttaatcctgtcggagctctaggtccaggacttc-tgattctagtatgcatttatgttctccatacaatgtaaattttcttaatttttatttatttattgtttaccttctttccctttctcagGGTACTGAGAGAGATTATGATCGAGCTGCAAAGGCATACATGCATGCCAAGTCCCAATCCAATGCACAAGCCATGTTCAACCTTGGGTACATGCATGAGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254324939|gb|GR834364.1|GR834364
EST:     GCTTTACTCATTGGAGATGCATATTACTATGGTCGG                         GGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAA
genomic: GCTTTACTCATTGGAGATGCATATTACTATGGTCGGgtatgtggtt ... cttctgccagGGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAA
EST: gi|151397725|gb|EV267598.1|EV267598
EST:     GTAATGAACACGCTGCTTTACTCATTGGAGATGCATATTACTATGGTCGG                         GGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAA
genomic: GTAATGAACATGCTGCTTTACTCATTGGAGATGCATATTACTATGGTCGGgtatgtggtt ... cttctgccagGGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAA
EST: gi|254324938|gb|GR834363.1|GR834363
EST:     GTAATGAACATGCTGCTTTACTCATTGGAGATGCATATTACTATGGTCGG                         GGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAA
genomic: GTAATGAACATGCTGCTTTACTCATTGGAGATGCATATTACTATGGTCGGgtatgtggtt ... cttctgccagGGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAA
EST: gi|192329383|gb|FK021837.1|FK021837
EST:     GTAATGAACATGCTGCTTTACTCATTGGAGATGCATATTACTATGGTCGG                         GGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAA
genomic: GTAATGAACATGCTGCTTTACTCATTGGAGATGCATATTACTATGGTCGGgtatgtggtt ... cttctgccagGGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctttttgcctgcaccttttcactttctcgtgtttccctttttccttctgccagGGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTATATGCATGCTAAATCACAATTGAACGCGCAAGCCATGTTCAATCTTGGATACATGCATGAGC
               ccttttcactttctcg  CT-rich tract
                                       ttttt  TA-rich tract