1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acaaaggaagtatgtactgctttctagttgttaggtgtaaccagctgtgtctgccaaagcaatatattgatatgatgaatttttcttgtccatcttgaagGGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGATTATCCAGACAATCCACCAACTGTTAGATTTCAGACTAGGATTAACATGA
species | Glycine max |
transcript | GLYMA08G04710.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGT GGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGATEST: gi|192319053|gb|FK010617.1|FK010617
genomic: ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagctttt ... catcttgaagGGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGAT
EST: ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGT GGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGATEST: gi|18716865|gb|BM522906.1|BM522906
genomic: ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagctttt ... catcttgaagGGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGAT
EST: ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGT GGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGATEST: gi|193650057|gb|FK597152.1|FK597152
genomic: ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagctttt ... catcttgaagGGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGAT
EST: ATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGT -ACTGTTCATGAAGGGCGTATATACCAGCTGAAATTATTTTGTGGCAAGGAEST: gi|298190494|gb|HO032615.1|HO032615
genomic: ATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagctttt ... catcttgaagGGC-GTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGA
EST: ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGT GGCGTTCATGAATGGCGTATCTACCAGCTGAAATTATTTTGTGGCAATGAT
genomic: ATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagctttt ... catcttgaagGGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGAT
tgtgtctgccaaagcaatatattgatatgatgaatttttcttgtccatcttgaagGGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGATTATCCAGACAATCCACCAACTGTTAGATTTCAGACTAGGATTAACATGA
tattgat putative branch site (score: 3)
tttttcttgtccatct putative PPT
aatatattgatatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaaggaagtatgtactgctttctagttgttaggtgtaaccagctgtgtctgccaaagcaatatattgatatgatgaatttttcttgtccatcttgaagGGCGTTCATGAAGGGCGTATCTACCAGCTGAAATTATTTTGTGGCAAGGATTATCCAGACAATCCACCAACTGTTAGATTTCAGACTAGGATTAACATGA
- - - - - tatgtac
- - - - - - - - -tgctttc
- - - - - - - - - - - - - - - - - - - aaccagc
- - - - - - - - - - - - - - - - - - - - - - - - - ctgccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatatg