1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaccgcaatagcaatttaaaaccatgcataggtacatgaataattaagttgttttcaattcattgaacttggaaattgtgatgtgaaattaaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGTTCGCGAGGATACCGAAACCTTCCTCAATCGGATAGTTCCCGAG
species | Glycine max |
transcript | GLYMA07G34680.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGEST: gi|18692788|gb|BM521636.1|BM521636
genomic: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
EST: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGEST: gi|9984433|gb|BE658541.1|BE658541
genomic: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
EST: CCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGEST: gi|31474712|gb|CD416740.1|CD416740
genomic: CCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
EST: ACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGEST: gi|15663182|gb|BI700553.1|BI700553
genomic: ACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
EST: ATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGEST: gi|23733010|gb|BU764686.1|BU764686
genomic: ATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
EST: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGEST: gi|16347696|gb|BI973291.1|BI973291
genomic: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
EST: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGEST: gi|7692412|gb|AW760519.1|AW760519
genomic: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
EST: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGEST: gi|31472535|gb|CD414563.1|CD414563
genomic: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
EST: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCAGCACACCAGTGCTTCTCTNACCATCAATGAGAATTATGACTCAGATGEST: gi|298175025|gb|HO018020.1|HO018020
genomic: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
EST: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGEST: gi|23733507|gb|BU764952.1|BU764952
genomic: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
EST: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCNNNNNNNNAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGEST: gi|120496558|gb|EH224725.1|EH224725
genomic: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
EST: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGEST: gi|298172343|gb|HO019383.1|HO019383
genomic: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
EST: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGEST: gi|6135090|gb|AW133483.1|AW133483
genomic: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
EST: CCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGEST: gi|120496987|gb|EH225154.1|EH225154
genomic: CCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
EST: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGEST: gi|27425952|gb|CA937472.1|CA937472
genomic: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
EST: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCT TGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
genomic: AATTGAGCAAGACCTCTCCGGCTTCAAGTGTGGCCTAGCTCATCTCTTCTgtgagtatac ... aaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATG
aagttgttttcaattcattgaacttggaaattgtgatgtgaaattaaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGTTCGCGAGGATACCGAAACCTTCCTCAATCGGATAGTTCCCGAG
atgtgaaattaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaccgcaatagcaatttaaaaccatgcataggtacatgaataattaagttgttttcaattcattgaacttggaaattgtgatgtgaaattaaaacgacagTGCAGCACACCAGTGCTTCTCTTACCATCAATGAGAATTATGACTCAGATGTTCGCGAGGATACCGAAACCTTCCTCAATCGGATAGTTCCCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT