1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtagtccgagaccacataacaatttatcttgattagtgggccttttgcgagacttaaaattcatatcttgattattaatttttttccattaatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
species | Glycine max |
transcript | GLYMA06G20830.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|9264571|gb|BE352718.1|BE352718
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|9819913|gb|BE555356.1|BE555356
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|23052700|gb|BU577192.1|BU577192
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|9899967|gb|BE608935.1|BE608935
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|9899961|gb|BE608929.1|BE608929
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGGCA-CAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|120532624|gb|EH260757.1|EH260757
genomic: GTTATGG-CAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|192294802|gb|FG987491.1|FG987491
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCCATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|11688767|gb|BF596443.1|BF596443
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|21677414|gb|BQ629765.1|BQ629765
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|151405122|gb|EV274936.1|EV274936
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|9259419|gb|BE347566.1|BE347566
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|192303149|gb|FG997725.1|FG997725
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|8403032|gb|BE058666.1|BE058666
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|9203371|gb|BE329657.1|BE329657
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|192303148|gb|FG997724.1|FG997724
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|21887742|gb|BQ740955.1|BQ740955
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|6726886|gb|AW311166.1|AW311166
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|16346227|gb|BI971822.1|BI971822
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|7796343|gb|AW781740.1|AW781740
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: AAGTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|11412475|gb|BF424486.1|BF424486
genomic: AAGTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|151403238|gb|EV273048.1|EV273048
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|192299215|gb|FG988673.1|FG988673
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|33388516|gb|CA851723.1|CA851723
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|15815568|gb|BI787843.1|BI787843
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCACEST: gi|22522146|gb|BU080957.1|BU080957
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
EST: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGA AGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
genomic: GTTATGGCAACAGATTCTGCCTATCACTTGGATGGAgtgagtatct ... taatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
ttgcgagacttaaaattcatatcttgattattaatttttttccattaatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
tttttttccatt CT-rich tract
ttaaaattcatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagtccgagaccacataacaatttatcttgattagtgggccttttgcgagacttaaaattcatatcttgattattaatttttttccattaatttgcagAGGAGTTATGGACCTGGGAGTCTAAAGACCTCAC
- - - - - - ccacata
- - - - - - - - - - - - - - - - - - - - -ccttttg