1 5' 3' | 2 5' 3' | 3 5' 3' |
...acagtagtagagtagctggtttttctgtgccagtggtaaataatagatataatataaagtttttttttttttttttttttttctggtttgtatgaagcagGGTGTGCCTGATTTATCCGAGTATGGGGATGTGTACGAGCTAGGATTTGGATTGGGACATGATAAGCCTCCAACCAGCGCTTTGGTGAAGAAAGAATTTC
species | Glycine max |
transcript | GLYMA06G14640.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGCAACTATGCTCAAGTTCGGTTTCTTGACCGATCAAGATCATAAAGAT GGTGTGCCTGATTTATCCGAGTATGGGGATGTGTACGAGCTAGGATTTGGAEST: gi|192298710|gb|FG988591.1|FG988591
genomic: CAGCAACTATGCTCAAGTTCGGTTTCTTGACCGATCAAGATCATAAAGATgtgagactcc ... tatgaagcagGGTGTGCCTGATTTATCCGAGTATGGGGATGTGTACGAGCTAGGATTTGGA
EST: CAGCAACTATGCTCAAGTTCGGTTTCTTGACCGATCAAGATCATAAAGAT GGTGTGCCTGATTTATCCGAGTATGGGGATGTGTACGAGCTAGGATTTGGA
genomic: CAGCAACTATGCTCAAGTTCGGTTTCTTGACCGATCAAGATCATAAAGATgtgagactcc ... tatgaagcagGGTGTGCCTGATTTATCCGAGTATGGGGATGTGTACGAGCTAGGATTTGGA
gatataatataaagtttttttttttttttttttttttctggtttgtatgaagcagGGTGTGCCTGATTTATCCGAGTATGGGGATGTGTACGAGCTAGGATTTGGATTGGGACATGATAAGCCTCCAACCAGCGCTTTGGTGAAGAAAGAATTTC
tttttttttttttttt CT-rich tract
aatataaagttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagtagtagagtagctggtttttctgtgccagtggtaaataatagatataatataaagtttttttttttttttttttttttctggtttgtatgaagcagGGTGTGCCTGATTTATCCGAGTATGGGGATGTGTACGAGCTAGGATTTGGATTGGGACATGATAAGCCTCCAACCAGCGCTTTGGTGAAGAAAGAATTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - -gtagctg
- - - - - - - - - - - -tctgtgc