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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgcataaaaagaaaaagaaaaaaaactttttagtgttactgacaattgattacattgtctcatcgtttgtttgtttctactttacattttaccctcattccacgtacagGATCATTCCAAAAGCTCTCATGCCTCTCGAG

Basic information

species Glycine max
transcript GLYMA06G05560.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18734867|gb|BM528431.1|BM528431
EST:     ATGGGCTTAATATCTCAGAGAGTGTATGATGGAGGCTGCCATGTCCTAGG                         GATCATTCCAAAAGCTCTCATGCCTCTCGAG
genomic: ATGGGCTTAATATCTCAGAGAGTGTATGATGGAGGCTGCCATGTCCTAGGgtatgtgcat ... ccacgtacagGATCATTCCAAAAGCTCTCATGCCTCTCGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtctcatcgtttgtttgtttctactttacattttaccctcattccacgtacagGATCATTCCAAAAGCTCTCATGCCTCTCGAG
                                ttttaccctcattcc  CT-rich tract
                       tactttacatttta  TA-rich tract