Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcaacctcattaaaatatagtaatgtttttcttgttggtttgtttgttctcatgaataatgaattatttccttgttggcatgcagAGCTTATGGTTTTGGGATTTATTTCCTTGCTCTTAACATTTGGTCAAAACTACATTTCTAAAATGTGTATTCCCGCGAAGTATGCACGCACAATGCTCCC

Basic information

species Glycine max
transcript GLYMA06G01800.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01800.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G33670.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagcaacctcattaaaatatagtaatgtttttcttgttggtttgtttgttctcatgaataatgaattatttccttgttggcat-gcagAGCTTATGGTTTTGGGATTTATTTCCTTGCTCTTAACATTTGGTCAAAACTACATTTCTAAAATGTGTATTCCCGCGAAGTATGCACGCACAATGCTCCC
|| | ||| | |   ||   ||     | ||||| || ||  |||  | | |  || |  | |  | || ||   || |||   | ||||||||||||||||||||||| ||||| ||| | ||||||||||| |||||||||||  | |   ||||| |  |  | |  || |  |   | |||  |  
gt-accaaaccctccaattgat-----ttttttttttttttttttcgtgggttacaagttttagaactttttgtgttattgattttgcagAGCTTATGGTTTTGGGATTCATTTCTTTGTTATTAACATTTGGACAAAACTACATAGCAAGTTTGTGTGTGGCGTCAAGATACGGCCATGCGATGTCCTT

upper sequence: GLYMA06G01800.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G42560.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgagcaacctcattaaaatatagtaatgtttttcttgt--tggtttgttt--gttctcatgaataatgaattatttccttgttg----gcat---gcagAGCTTATGGTTTTGGGATTTATTTCCTTGCTCTTAACATTTGGTCAAAACTACATTTCTAAAATGTGTATTCCCGCGAAGTATGCACGCACAATGCTCCC
|| ||  |  | | | |   || |||    | || || |  ||    ||||  ||||  ||  |||   | |||  ||    ||      |||   | |||||||||||||||||||||||||||| ||||  |||||||||| |||||||||||| | |  || ||| ||||  | |  || |  |   |||||     
gttagggatgtaactgatggatcgtatccctattattttcatgaaaagttttggttcctatatatatatatttaactcaaaattatgttacatattgtagAGCTTATGGTTTTGGGATTTATTTCCCTGCTTCTAACATTTGGCCAAAACTACATTGCGAGCATATGTGTTCCATCAAGATACGGCCATGCAATGTCTTT

upper sequence: GLYMA06G01800.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv18s0122g00910.t01 (Vitis vinifera), 3'ss of exon 2
--gtgagcaacctcatt----aaaatatagtaatgtttt-tcttgttggtttgtttgt--tctcatgaataatgaattatttccttgttggca-----tgcagAGCTTATGGTTTTGGGATTTATTTCCTTGCTCTTAACATTTGGTCAAAACTACATTTCTAAAATGTGTATTCCCGCGAAGTATGCACGCACAATGCTCCC
  | ||||    || ||    |||| | |||  | | || | | |||  ||||||| |  | |    | | |  |  |   ||||  | |  |     |||||| |||||| || | ||||| |||||  | ||||| |||||||| |||||||||||||| ||||| ||||||||| |  |   |||    || ||| | ||
gtgagagctttttctttttcaaaaaaaaagttgtatcttgtatagttcttttgtttttggtttttctagtgacaatcttcctcctcctggataaattttgcagAACTTATGATTCTAGGATTCATTTCTCTACTCTTGACATTTGGGCAAAACTACATTTCCAAAATCTGTATTCCCTCTGACCTTGCTGATACGATGTTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttggtttgtttgttctcatgaataatgaattatttccttgttggcatgcagAGCTTATGGTTTTGGGATTTATTTCCTTGCTCTTAACATTTGGTCAAAACTACATTTCTAAAATGTGTATTCCCGCGAAGTATGCACGCACAATGCTCCC
                                    tttccttgtt  CT-rich tract
                     atgaataatgaattat  TA-rich tract