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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgagttgttgttcttttttcgcattttcattttgtttctttctattgtaacaaacaatacctatctacataatgtcctacagATTGAGCTTCAAAATCCGTGTCGCCAAGGGAAGAAATTGCTTGTTCTGGATATTGATTACACTCTCTTCGATCACCGCTCCACTGCTGAGAACCCTCTTC

Basic information

species Glycine max
transcript GLYMA05G30160.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G30160.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv12s0035g00640.t01 (Vitis vinifera), 3'ss of exon 2
----------gttcgagttgttgttcttttttcgcattttcat--tttgtttctttctattgtaacaaacaatacctatctacataatgtcct---acagATTGAGCTTCAAAATCCGTGTCGCCAAGGGAAGAAATTGCTTGTTCTGGATATTGATTACACTCTCTTCGATCACCGCTCCACTGCTGAGAACCCTCTTC
           ||  | ||||         || | | ||  |   |  |||        ||| |||      |   | |||| |   | || |   | ||||||| || |  || || || ||  | ||||| ||| ||||||| |||||||| ||||| ||||| || |||||||| || || || |||||||||||| 
caaatggcatttttaacttgtatgcagagattagaacttgtagaatacgttggcactgtttgaaactcgttctgaatgtctataatgtttctttttatagATTGAACTCCGGAACCCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGATATCGATTATACTCTATTTGATCACCGTTCAACAGCAGAGAACCCTCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193473616|gb|FK442735.1|FK442735
EST:     ATATGGAAGTCAACAAGCAGAAATTGAATAGACGCATTCATCAATTCAAT                         ATTGAGCTTCAAAATCCGTGTCGCCAAGGGAAGAAATTGCTTGTTCTGGAT
genomic: ATATGGAAGTCAACAAGCAGAAATTGAATAGACGCATTCATCAATTCAATgttcgagttg ... tgtcctacagATTGAGCTTCAAAATCCGTGTCGCCAAGGGAAGAAATTGCTTGTTCTGGAT
EST: gi|193631354|gb|FK583731.1|FK583731
EST:     AGCAGAAATTGAATAGACGCATTCATCAATTCAAT                         ATTGAGCTTCAAAATCCGTGTCGCCAAGGGAAGAAATTGCTTGTTCTGGAT
genomic: AGCAGAAATTGAATAGACGCATTCATCAATTCAATgttcgagttg ... tgtcctacagATTGAGCTTCAAAATCCGTGTCGCCAAGGGAAGAAATTGCTTGTTCTGGAT
EST: gi|151393341|gb|EV263216.1|EV263216
EST:     ATATGGAAGTCAACAAGCAGAAATTGAATAGACGCATTCATCAATTCAAT                         ATTGAGCTTCAAAATCCGTGTCGCCAAGGGAAGAAATTGCTTGTTCTGGAT
genomic: ATATGGAAGTCAACAAGCAGAAATTGAATAGACGCATTCATCAATTCAATgttcgagttg ... tgtcctacagATTGAGCTTCAAAATCCGTGTCGCCAAGGGAAGAAATTGCTTGTTCTGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattttgtttctttctattgtaacaaacaatacctatctacataatgtcctacagATTGAGCTTCAAAATCCGTGTCGCCAAGGGAAGAAATTGCTTGTTCTGGATATTGATTACACTCTCTTCGATCACCGCTCCACTGCTGAGAACCCTCTTC
                 ttgtaac  putative branch site (score: 2)
           tttctatt  TA-rich tract