Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaacatcatctactcatactctcatagtgtcttatggttggttggttcatggttcatggctcgtgctaatatagcgcttcttgtttccagCTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCGCACCACATCATCAAACGAATGCTCTCCAGCTTGGCCGATCCTTATACTC

Basic information

species Glycine max
transcript GLYMA05G29820.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13312280|gb|BG405931.1|BG405931
EST:     ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAG                         CTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
genomic: ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAGgtaactaaca ... ttgtttccagCTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
EST: gi|120533174|gb|EH261307.1|EH261307
EST:     ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAG                         CTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
genomic: ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAGgtaactaaca ... ttgtttccagCTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
EST: gi|9258053|gb|BE346200.1|BE346200
EST:     TCGCCACAGATGGTCCCAGGACACTTGGCAG                         CTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
genomic: TCGCCACAGATGGTCCCAGGACACTTGGCAGgtaactaaca ... ttgtttccagCTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
EST: gi|20811748|gb|BQ296226.1|BQ296226
EST:     ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAG                         CTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
genomic: ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAGgtaactaaca ... ttgtttccagCTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
EST: gi|120532592|gb|EH260725.1|EH260725
EST:     ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGTAG                         CTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG
genomic: ACACCTTTCTCGACACTGGTCGCCACAGATGGTCCCAGGACACTTGGCAGgtaactaaca ... ttgtttccagCTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttggttggttcatggttcatggctcgtgctaatatagcgcttcttgtttccagCTGAAGAGGGAAGCTATTTTGAGCAATTCCATTCAGACAAGATCAAAGGCGCACCACATCATCAAACGAATGCTCTCCAGCTTGGCCGATCCTTATACTC
                            tgctaat  putative branch site (score: 2)
                                       cgcttcttgtttcc  putative PPT
                               taatata  TA-rich tract